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            "registration_opening": "2024-03-29",
            "registration_closing": "2024-04-21",
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        },
        {
            "id": 613,
            "name": "Les langages de workflows pour une analyse bioinformatique reproductible - session 2024 / Workflow languages for reproducible bioinformatics analysis -2024 session",
            "shortName": "WF4bioinfo 2024",
            "description": "L’Institut Français de Bioinformatique (IFB) organise en partenariat avec iPOP-UP (représenté par EDC) une formation sur les langages de workflows en bioinformatique à destination des bioinformaticien·ne·s et des bioanalystes. La formation abordera les fondamentaux et les fonctionnalités avancées des deux langages Snakemake et Nextflow. Ces outils sont en effet devenus indispensables pour assurer la reproductibilité et l’efficacité des analyses bioinformatiques. La formation sera structurée en deux séquences :\r\n- une journée commune qui abordera les grands principes des gestionnaires de workflow, en particulier dans le domaine de la bioinformatique et en lien avec les infrastructures de calcul de type cluster et cloud proposés au sein de l’IFB \r\n- une  journée de session pratique  avec 1 atelier snakemake et 1 atelier nextflow en parallèle au choix des participants. Nous proposons aux participants qui le souhaitent de travailler sur leur propre workflow dans une approche “Bring your own script” avec l’aide de l’équipe pédagogique.",
            "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=29",
            "is_draft": false,
            "costs": [],
            "topics": [
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                "http://edamontology.org/topic_0091"
            ],
            "keywords": [
                "FAIR",
                "Reproducibility",
                "Nextflow",
                "Snakemake"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 20,
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            "end_date": "2024-10-16",
            "venue": "",
            "city": "Paris",
            "country": "France",
            "geographical_range": "National",
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            "id": 612,
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                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
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            ],
            "topics": [
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            "keywords": [
                "NGS Data Analysis",
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                "Cluster",
                "Langage R de base"
            ],
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            "end_date": "2024-05-17",
            "venue": "",
            "city": "Castanet Tolosan",
            "country": "France",
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            ],
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            "registration_opening": "2024-03-24",
            "registration_closing": null,
            "registration_status": "open",
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        },
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            "id": 611,
            "name": "Using sed and awk to modify large large text files - session 24/04/2024",
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            "description": "Many analysis generate large result text files which have to be checked, merged, split, reduced. Several tools have been developed and are available on Unix to do this, including sed and AWK. During this course you will be trained to process large files with sed and AWK. Sed is tool enabling to select and process lines. You can easily insert, delete, modify, append lines to very large files with millions of lines. AWK will enable to perform more fine tuned file modifications based on columns. It includes also more mathematical and string functions.  The course is based mainly on exercises with small sections presenting concepts and commands.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/modify-and-extract-information-from-large-text-files-day-2-3/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
                "http://edamontology.org/topic_3316"
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            ],
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            ],
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            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2024-03-26T14:25:14.649994Z",
            "type": "Training course",
            "start_date": "2024-04-24",
            "end_date": "2024-04-24",
            "venue": "",
            "city": "Castanet Tolosan",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [
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                    "id": 141,
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            ],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2024-03-24",
            "registration_closing": null,
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        },
        {
            "id": 610,
            "name": "Cluster - session 23/04/2024",
            "shortName": "",
            "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/",
            "is_draft": false,
            "costs": [
                "Priced",
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [],
            "keywords": [
                "Linux",
                "Cluster"
            ],
            "prerequisites": [
                "Linux/Unix"
            ],
            "openTo": "Everyone",
            "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.",
            "maxParticipants": 12,
            "contacts": [
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            ],
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            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2024-03-26T14:24:58.135354Z",
            "type": "Training course",
            "start_date": "2024-04-23",
            "end_date": "2024-04-23",
            "venue": "",
            "city": "Castanet Tolosan",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [
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                    "name": "Cluster Slides",
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                },
                {
                    "id": 140,
                    "name": "TP Cluster",
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                }
            ],
            "computingFacilities": [],
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            "registration_opening": "2024-03-24",
            "registration_closing": null,
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        },
        {
            "id": 608,
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            "shortName": "",
            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands  (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2-2/",
            "is_draft": false,
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                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
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            "topics": [
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            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2024-03-26T14:24:31.157055Z",
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            "start_date": "2024-04-22",
            "end_date": "2024-04-22",
            "venue": "",
            "city": "Castanet Tolosan",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
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                {
                    "id": 138,
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                }
            ],
            "computingFacilities": [],
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            "registration_opening": "2024-03-24",
            "registration_closing": null,
            "registration_status": "open",
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        },
        {
            "id": 607,
            "name": "Train-the-Trainer",
            "shortName": "TtT",
            "description": "The programme objective is to give instructors tools and tips for providing an enriching learning experience to trainees, irrespective of topic, and to include best-practice guidance on course and training material development.",
            "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=25",
            "is_draft": false,
            "costs": [],
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            "prerequisites": [],
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            "accessConditions": "",
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            "contacts": [
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                "https://catalogue.france-bioinformatique.fr/api/userprofile/639/?format=api"
            ],
            "elixirPlatforms": [
                {
                    "id": 1,
                    "name": "Training",
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                }
            ],
            "communities": [],
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            "organisedByOrganisations": [
                {
                    "id": 6,
                    "name": "Elixir-FR",
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                },
                {
                    "id": 63,
                    "name": "TAGC",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/TAGC/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 29,
                    "name": "IFB Core",
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            ],
            "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/961/course/section/152/logo_TtT_MRS_def.png",
            "updated_at": "2024-03-21T15:53:33.771360Z",
            "type": "Training course",
            "start_date": "2024-07-01",
            "end_date": "2024-07-02",
            "venue": "CNRS - Délégation Provence et corse, 31 Chemin Joseph Aiguier, 13009 Marseille.",
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            "country": "France",
            "geographical_range": "",
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            "registration_closing": "2024-04-22",
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        },
        {
            "id": 606,
            "name": "5th workshop Single-Cell : Transcriptomics, Spatial and Long reads",
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            "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=27",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [],
            "keywords": [
                "Single-Cell Sequencing",
                "long read sequencing",
                "spatial transcriptomics"
            ],
            "prerequisites": [
                "Master",
                "Autre (Diplôme universitaire, école d'ingénieur ...)"
            ],
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            "accessConditions": "Participants must have prior experience on NGS data analysis with everyday use of R and/or Python and good knowledge of Unix command line. Before the training, participants are advised to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets. \r\nIt is not necessary to have personal single-cell data to analyse.",
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                    "name": "IFB",
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                },
                {
                    "id": 48,
                    "name": "Institut Pasteur",
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            ],
            "organisedByTeams": [],
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            "updated_at": "2024-03-20T16:00:20.423462Z",
            "type": "Training course",
            "start_date": "2024-10-20",
            "end_date": "2024-10-25",
            "venue": "Station Biologique",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "International",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2024-03-12",
            "registration_closing": "2024-05-07",
            "registration_status": "closed",
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        },
        {
            "id": 605,
            "name": "BIGomics, Génomique Comparative",
            "shortName": "BOGC",
            "description": "Ce module vise à fournir une expérience d’analyse de données de génomique.\r\nLes technologies Next Generation Sequencing (NGS) ont conduit à une production massive de\r\ndonnées « Omiques » pour les plantes cultivées majeures, ce qui demande de nouvelles\r\napproches d’analyses haut débit. La connaissance de ces approches et des outils qui en\r\ndécoulent pour analyser la séquence et la structure des génomes, les annoter et caractériser\r\nleur diversité et leurs profils d’expression permet d’aborder des questions de recherche\r\nbiologique avancée sur la diversité et l’adaptation des plantes. Les espèces prises en\r\nconsidération sont des espèces phares des instituts de recherche agronomique de Montpellier\r\net font partie des cultures les plus importantes pour l’agriculture mondiale. Des plateformes\r\nd’outils bioinformatiques récents reposant sur des centres de calcul et de stockage haute\r\ncapacité, sont en place pour analyser des jeux de données originales permettant de mieux\r\ncomprendre comment les génomes de plantes évoluent et s’expriment. L’ensemble de ces\r\nconnaissances Findable, Accessible, Interoperable, Reusable car intégré dans des systèmes\r\nd’information peut soutenir l'identification de gènes responsables de caractères adaptatifs ou\r\nde production. La mobilisation de jeunes chercheurs sur ces sujets est primordiale tant la\r\ndemande est importante.\r\nLe module est structuré sous la forme de cours et de travaux tutorés avec la rencontre de\r\ngénéticiens et de bioinformaticiens permettant d’appréhender les formes variées des progrès\r\nen bioanalyse génomique. Il permet d’acquérir les lignes directrices pour l’accès, l'utilisation\r\net l'analyse de différents types de données omique (e.g. (épi)génomique, transcriptomique,\r\nprotéique, métabolique) en vue d’accélérer les recherches en génomique fonctionnelle et\r\nbiotechnologie des plantes.\r\nL’évaluation sera faite sur la base de la participation et de la qualité du projet proposé par\r\nl’étudiant en fin de module, individuellement ou en binôme, suivant les consignes détaillées en\r\ndébut de module",
            "homepage": "https://elearning.cirad.fr/mod/resource/view.php?id=2339",
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