Handles creating, reading and updating events.

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            "name": "Python scripts for bioinformatics and Linux - Session 2025",
            "shortName": "Scripts en Python pour la bioinformatique et environnement Linux",
            "description": "OBJECTIFS\r\n- Connaître les principes et les avantages du système Linux\r\n- Connaître et savoir utiliser les commandes de base permettant de lancer des programmes sous Linux\r\n- Comprendre et savoir lancer des scripts\r\n- Être capable d'écrire des scripts en Python\r\n- Acquérir de l'autonomie pour effectuer des analyses bioinformatiques qui combinent plusieurs outils \r\n\r\nPRÉREQUIS\r\n- Notions de base en informatique : fichiers, répertoires, etc. \r\n\r\nPROGRAMME\r\n- Linux : lignes de commandes, principales commandes, redirection\r\n- Lancer, créer et modifier des scripts\r\n- Notions de variables, de boucles, de choix\r\n- Programmation de scripts : utilisation de paramètres et de variables, combinaison d'outils et de logiciels, écriture des résultats dans un ou plusieurs fichiers\r\n- Création d'un pipeline d'outils",
            "homepage": "https://cnrsformation.cnrs.fr/linux-et-script-pour-bioinformatique",
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                "1200 €"
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            "updated_at": "2025-02-11T08:50:54.103356Z",
            "type": "Training course",
            "start_date": "2025-11-04",
            "end_date": "2025-11-07",
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            "name": "Initiation à Git / Git Initiation - 2024",
            "shortName": "Git Initiation - 2024",
            "description": "Objectifs\r\n- Savoir définir ce qu’est un outil de gestion de version\r\n- Être capable d’initialiser un entrepôt Git pour un projet\r\n- Être capable de définir quels fichiers inclure/exclure d’un projet\r\n- Savoir enregistrer localement une nouvelle version pour un projet\r\n- Savoir partager des modifications locales avec tous les contributeurs d’un projet\r\n- Savoir gérer des modifications en parallèle en utilisant les branches.\r\n- Connaître les bonnes pratiques pour contribuer à projet tiers\r\nProgramme :\r\n- Présentation des avantages de la gestion de versions (projets individuels & projets collaboratifs)\r\n- Présentation des principes de fonctionnement de Git\r\n- Présentation et mise en œuvre des commandes principales de Git (clone, checkout, add, rm, commit, merge,\r\npush, pull) ; en ligne de commande ou en utilisant une interface graphique (GitHub et GitLab)",
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            "updated_at": "2025-01-23T13:48:53.713733Z",
            "type": "Training course",
            "start_date": "2024-05-31",
            "end_date": "2024-05-31",
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            "city": "Roscoff",
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            "name": "Introduction aux bonnes pratiques pour des analyses reproductibles : 2025",
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            "description": "Objectifs pédagogiques\r\n\r\nL’objectif de cette formation est d’initier les apprenants aux bonnes pratiques pour la reproductibilité des analyses. Ils apprendront à rédiger des rapports d’analyse en R Markdown et à les déposer sur un dépôt GitHub. Les principes FAIR (faciles à trouver, accessibles, interopérables et réutilisables) et les bases de la rédaction de PGD (plans de gestion de données) seront également présentés. Durant la formation, nous utiliserons RStudio et GitHub.\r\n\r\nProgramme\r\n\r\nPrincipes et enjeux de la recherche reproductible\r\nUtilisation de GitHub\r\nGestion des versions d’un document\r\nRédaction de document computationnel\r\nPartage d’un rapport avec ses collaborateurs\r\nPrincipes FAIR et PGD",
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            "name": "Introduction à l'analyse de données transcriptomiques avec Galaxy",
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            "description": "L’objectif est de se familiariser avec les étapes d’analyses des données transcriptomiques ou RNA-seq avec référence pour extraire les gènes et fonctions différentiellement exprimés. Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main de ces étapes d’analyses en utilisant la plateforme de bio-analyse Galaxy. \r\n\r\n\r\nAprès une introduction à la transcriptomique, une session pratique sur la plateforme Galaxy couvrira comment :\r\n- évaluer la qualité des données transcriptomiques,\r\n- aligner des données transcriptomiques sur un génome de référence,\r\n- estimer le nombre de séquences par gènes,\r\n- construire et faire une analyse d’expression différentielle des gènes\r\n- faire une analyse de l’enrichissement fonctionnel des gènes différentiellement exprimés",
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                "Transcriptomics (RNA-seq)"
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            "type": "Training course",
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            "end_date": "2024-07-18",
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            "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.",
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                "Non-academic: 550€ + 20% taxes (TVA)",
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                "http://edamontology.org/topic_2885"
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            "updated_at": "2024-06-10T12:36:32.603065Z",
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            "start_date": "2024-10-09",
            "end_date": "2024-10-10",
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            "city": "castanet-tolosan",
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            "name": "NGS data analysis on the command line - Session 5",
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            "updated_at": "2022-12-12T12:31:11.145062Z",
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            "start_date": "2023-03-02",
            "end_date": "2023-03-06",
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            "id": 748,
            "name": "Best practices for using the BiRD cluster",
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            "homepage": "https://pf-bird.univ-nantes.fr/training/cluster/",
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                "Free"
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            "updated_at": "2026-01-27T10:36:05.128514Z",
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            "description": "This course offers an introduction to work with Linux. We will describe the Linux environment, the first linux commands so participants can start to utilize command-line tools and feel comfortable using bioinformatics softwares through a linux terminal",
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            "updated_at": "2022-06-02T11:50:50.627601Z",
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            "start_date": "2022-04-04",
            "end_date": "2022-04-05",
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            "description": "Bilille propose des formations en partenariat avec CNRS Formation Entreprises à destination des chercheur-euse-s, enseignant-e-s-chercheur-euse-s, ingénieur-e-s, technicien-ne-s en biologie et médecine. \r\n\r\nObjectifs :\r\n- Comprendre les méthodes de base à utiliser pour mener une analyse de séquences\r\n- Savoir exploiter les ressources bioinformatiques publiques\r\n- Savoir utiliser les logiciels d'alignement, de recherche d'homologie, d'annotation de gènes et de protéines",
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            "name": "Manipulation de données avec R, introduction à tidyverse (session 2024)",
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            "homepage": "https://documents.migale.inrae.fr/trainings.html",
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            "updated_at": "2024-01-18T12:35:50.766349Z",
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            "start_date": "2024-04-03",
            "end_date": "2024-04-04",
            "venue": "https://migale.inrae.fr/how-to-come",
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        {
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            "name": "4th Workshop Single-Cell / SincellTE 2022 / Single-Cell : Transcriptomics, Spatial and Multi-Omics",
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            "description": "This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis  with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.",
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            "type": "Training course",
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            "end_date": "2022-01-14",
            "venue": "Roscoff Biological Station\r\nPlace Georges Teissier",
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            "id": 532,
            "name": "Summer School Multi-omics Data Analysis and Integration",
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            "description": "Researchers often have access to or generate multiple omics data (RNAseq, metabolomics, lipidomics, proteomics…) within a single study. Although each omics data is usually analyzed individually, combining complementary data can yield a better understanding of the mechanisms involved in biological processes. Several integrative approaches are now available to combine such data, coming essentially from two families of methods, namely multivariate statistical analyses and network-based approaches. During this summer school both methodologies will be covered, introducing RGCCA and mixOmics for multivariate analyses and WGCNA and SNF for network-based strategies. To get meaningful biological information, the interpretation of statistical results needs to be done contextualizing them in the available biological knowledge. To address this major step we need to be able to access and interrogate databases. We will harness this subject introducing semantic web and knowledge graphs in the context of metabolic networks.\r\n\r\nDuring the School, significant time will be devoted to hands-on and the program will be divided into three phases / topics:\r\n- Multivariate statistical analyses (Instructors: Arnaud Gloaguen & Jimmy Vandel)\r\n- Network-based approaches (Instructors: Morgane Térézol & Marie-Galadriel Brière)\r\n- Results contextualisation: an introduction to metabolic models, web semantic and knowledge graphs (Instructors: Jean-Clément Gallardo, Maxime Delmas & Marco Pagni)\r\n\r\nThe participants will work in groups and shortly present the application of what they have learned to their own project.",
            "homepage": "https://www.sib.swiss/training/course/20230903_MODAI",
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                "650 EUR/CHF for academics",
                "1000 EUR/CHF for for-profit companies"
            ],
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                "http://edamontology.org/topic_2269",
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                "Multivariate analyses",
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            ],
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                "basic statistics",
                "R programming"
            ],
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            "updated_at": "2023-05-17T08:59:43.914253Z",
            "type": "Training course",
            "start_date": "2023-09-03",
            "end_date": "2023-09-08",
            "venue": "Centre de Vacances et Colloques Paul Langevin",
            "city": "Aussois",
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