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            "registration_status": "unknown",
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        {
            "id": 703,
            "name": "Python scripts for bioinformatics and Linux - Session 2025",
            "shortName": "Scripts en Python pour la bioinformatique et environnement Linux",
            "description": "OBJECTIFS\r\n- Connaître les principes et les avantages du système Linux\r\n- Connaître et savoir utiliser les commandes de base permettant de lancer des programmes sous Linux\r\n- Comprendre et savoir lancer des scripts\r\n- Être capable d'écrire des scripts en Python\r\n- Acquérir de l'autonomie pour effectuer des analyses bioinformatiques qui combinent plusieurs outils \r\n\r\nPRÉREQUIS\r\n- Notions de base en informatique : fichiers, répertoires, etc. \r\n\r\nPROGRAMME\r\n- Linux : lignes de commandes, principales commandes, redirection\r\n- Lancer, créer et modifier des scripts\r\n- Notions de variables, de boucles, de choix\r\n- Programmation de scripts : utilisation de paramètres et de variables, combinaison d'outils et de logiciels, écriture des résultats dans un ou plusieurs fichiers\r\n- Création d'un pipeline d'outils",
            "homepage": "https://cnrsformation.cnrs.fr/linux-et-script-pour-bioinformatique",
            "is_draft": false,
            "costs": [
                "1200 €"
            ],
            "topics": [],
            "keywords": [
                "Linux",
                "Python Language"
            ],
            "prerequisites": [],
            "openTo": "Everyone",
            "accessConditions": "",
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                    "id": 7,
                    "name": "ATGC",
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            ],
            "logo_url": null,
            "updated_at": "2025-02-11T08:50:54.103356Z",
            "type": "Training course",
            "start_date": "2025-11-04",
            "end_date": "2025-11-07",
            "venue": "",
            "city": "Montpellier",
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            "registration_opening": "2025-02-01",
            "registration_closing": "2025-10-20",
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        },
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            "id": 659,
            "name": "Annotation and analysis of prokaryotic genomes using the MicroScope platform - November 2025",
            "shortName": "MicroScope training - November 2025",
            "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.",
            "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/",
            "is_draft": false,
            "costs": [
                "Priced"
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            "topics": [
                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_3301"
            ],
            "keywords": [],
            "prerequisites": [
                "Licence"
            ],
            "openTo": "Everyone",
            "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/",
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                    "id": 15,
                    "name": "Laboratory of Bioinformatics Analyses for Genomics and Metabolism",
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                {
                    "id": 71,
                    "name": "UEVE",
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            ],
            "organisedByTeams": [
                {
                    "id": 9,
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            "logo_url": "https://labgem.genoscope.cns.fr/wp-content/uploads/2021/06/GENOSCOPE-LABGeM.jpg",
            "updated_at": "2025-01-23T13:31:56.736534Z",
            "type": "Training course",
            "start_date": "2025-11-24",
            "end_date": "2025-11-28",
            "venue": "",
            "city": "Evry",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
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            "realisation_status": "future",
            "registration_opening": null,
            "registration_closing": "2025-10-26",
            "registration_status": "open",
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            "id": 582,
            "name": "Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy  : 2025",
            "shortName": "Analyse donées NGS sous Galaxy: 2025",
            "description": "Objectifs pédagogiques\r\nConnaître les concepts et méthodes bioinformatiques utilisés pour l’analyse primaire de données issues de séquenceurs nouvelle génération (NGS). Savoir effectuer un alignement sur un génome de référence, un assemblage de novo d’un génome bactérien\r\n\r\nProgramme\r\nThéorie\r\n* Présentation des différents types de technologies de séquençage (lectures longues et courtes)\r\n\r\nPratique : Analyse des données de séquençage d’un génome bactérien\r\n* Contrôle qualité\r\n* Assemblage de-novo\r\n* Nettoyage des données\r\n* Assemblage\r\n* Visualisation et statistiques sur l’assemblage\r\n* Alignement de lectures sur un génome de référence et visualisation\r\nTous les TPs seront réalisés sous l’environnement d’exécution de traitements Galaxy.",
            "homepage": "https://documents.migale.inrae.fr/trainings.html",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [
                "http://edamontology.org/topic_0102",
                "http://edamontology.org/topic_0092",
                "http://edamontology.org/topic_0196",
                "http://edamontology.org/topic_3168"
            ],
            "keywords": [
                "Galaxy",
                "NGS"
            ],
            "prerequisites": [
                "Galaxy - Basic usage"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 10,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api"
            ],
            "elixirPlatforms": [],
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            "organisedByOrganisations": [
                {
                    "id": 82,
                    "name": "INRAE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api"
                },
                {
                    "id": 88,
                    "name": "BioinfOmics",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 10,
                    "name": "MIGALE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api"
                }
            ],
            "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png",
            "updated_at": "2025-01-23T15:28:28.758744Z",
            "type": "Training course",
            "start_date": "2025-03-21",
            "end_date": "2025-03-21",
            "venue": "https://migale.inrae.fr/how-to-come",
            "city": "Jouy-en-Josas",
            "country": "France",
            "geographical_range": "",
            "trainers": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api"
            ],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2025-01-22",
            "registration_closing": "2025-03-06",
            "registration_status": "closed",
            "courseMode": "Onsite"
        },
        {
            "id": 652,
            "name": "Analyses NGS avec R",
            "shortName": "",
            "description": "Cette formation introduira les paquetages Bioconductor permettant l'analyse de données issues du séquençage nouvelle génération.\r\n\r\n- Rappels des concepts du séquençage NGS\r\n- Les outils d'annotation et de conversion d'identifiants\r\n- L'analyse des reads et du résultat d'alignement\r\n- L'analyse d'expression différentielle en RNA-seq\r\n- Les techniques d'enrichissement\r\n- Les outils de visualisation pour les NGS\r\n\r\nLa fin du stage (2 h) sera consacrée à un atelier pédagogique d'analyse et de réflexion sur les données apportées par les stagiaires.",
            "homepage": "https://cnrsformation.cnrs.fr/analyses-ngs-r?axe=176",
            "is_draft": false,
            "costs": [],
            "topics": [
                "http://edamontology.org/topic_0605"
            ],
            "keywords": [
                "NGS Data Analysis",
                "R Language",
                "Gene expression differential analysis",
                "Data visualization"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 12,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/154/?format=api"
            ],
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            "sponsoredBy": [
                {
                    "id": 6,
                    "name": "CNRS formation entreprise",
                    "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20formation%20entreprise/?format=api"
                }
            ],
            "organisedByOrganisations": [
                {
                    "id": 1,
                    "name": "CNRS formation entreprises",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 6,
                    "name": "CBiB",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/CBiB/?format=api"
                }
            ],
            "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png",
            "updated_at": "2024-12-04T10:38:28.208166Z",
            "type": "Training course",
            "start_date": "2025-09-25",
            "end_date": "2025-09-26",
            "venue": "",
            "city": "Bordeaux",
            "country": "France",
            "geographical_range": "National",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2024-12-03",
            "registration_closing": "2025-09-19",
            "registration_status": "open",
            "courseMode": "Onsite"
        },
        {
            "id": 693,
            "name": "Introduction aux bonnes pratiques pour des analyses reproductibles : 2025",
            "shortName": "Good practices for better reproducibility of analyses :2025",
            "description": "Objectifs pédagogiques\r\n\r\nL’objectif de cette formation est d’initier les apprenants aux bonnes pratiques pour la reproductibilité des analyses. Ils apprendront à rédiger des rapports d’analyse en R Markdown et à les déposer sur un dépôt GitHub. Les principes FAIR (faciles à trouver, accessibles, interopérables et réutilisables) et les bases de la rédaction de PGD (plans de gestion de données) seront également présentés. Durant la formation, nous utiliserons RStudio et GitHub.\r\n\r\nProgramme\r\n\r\nPrincipes et enjeux de la recherche reproductible\r\nUtilisation de GitHub\r\nGestion des versions d’un document\r\nRédaction de document computationnel\r\nPartage d’un rapport avec ses collaborateurs\r\nPrincipes FAIR et PGD",
            "homepage": "https://documents.migale.inrae.fr/trainings.html",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [
                "http://edamontology.org/topic_0605"
            ],
            "keywords": [
                "Reproducibility"
            ],
            "prerequisites": [],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 10,
            "contacts": [
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            ],
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                },
                {
                    "id": 88,
                    "name": "BioinfOmics",
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            ],
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                    "name": "MIGALE",
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            ],
            "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png",
            "updated_at": "2025-01-23T15:36:00.927981Z",
            "type": "Training course",
            "start_date": "2025-04-04",
            "end_date": "2025-04-04",
            "venue": "",
            "city": "Jouy-en-Josas",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
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            "registration_opening": "2025-01-22",
            "registration_closing": "2025-03-20",
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        },
        {
            "id": 658,
            "name": "Annotation and analysis of prokaryotic genomes using the MicroScope platform - March 2025",
            "shortName": "MicroScope training - March 2025",
            "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.",
            "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/",
            "is_draft": false,
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                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0085",
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            "openTo": "Everyone",
            "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/",
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                    "id": 71,
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            ],
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            ],
            "logo_url": "https://labgem.genoscope.cns.fr/wp-content/uploads/2021/06/GENOSCOPE-LABGeM.jpg",
            "updated_at": "2025-01-23T13:31:47.576548Z",
            "type": "Training course",
            "start_date": "2025-03-24",
            "end_date": "2025-03-28",
            "venue": "",
            "city": "Evry",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
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            "realisation_status": "future",
            "registration_opening": null,
            "registration_closing": "2025-02-24",
            "registration_status": "closed",
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        },
        {
            "id": 690,
            "name": "Traitement bioinformatique et analyse différentielle de données d’expression RNA-seq sous Galaxy : 2025",
            "shortName": "Analyse données RNA-seq sous Galaxy",
            "description": "Objectifs pédagogiques\r\nA l’issue de cette formation, vous serez capable, dans le cadre d’une analyse de données RNA- seq avec génome de référence et plan d’expérience simple :\r\n* de connaître le vocabulaire et les concepts bioinformatiques et biostatistiques ;\r\n* de savoir enchaîner de façon pertinente un ensemble d’outils bioinformatiques et biostatistiques dans l’environnement Galaxy ;\r\n* de comprendre le matériel et méthodes d’un article du domaine ;\r\n* d’évaluer la pertinence d’une analyse RNA-seq en identifiant les éléments clefs et comprendre les particularités liées à la nature des données.\r\n\r\nProgramme\r\nBioinformatique :\r\n* Obtenir des données de qualité : nettoyage, filtrage, qualité\r\n* Aligner les lectures sur un génome de référence\r\n* Détecter de nouveaux transcrits\r\n* Quantifier l’expression des gènes\r\n* Préparer et déployer unensemble d’analyses sur plusieurs échantillons\r\n\r\nBiostatistique :\r\n* Construire un plan d’expérience simple\r\n* Normaliser les données de comptage\r\n* Identifier les gènes différentiellements exprimés\r\n* Se sensibiliser aux tests multiples\r\n\r\nAnalyse de protocoles Bioinformatique et Biostatistiques issus de la littérature",
            "homepage": "https://documents.migale.inrae.fr/trainings.html",
            "is_draft": false,
            "costs": [
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            ],
            "topics": [
                "http://edamontology.org/topic_0102",
                "http://edamontology.org/topic_3170",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_3308"
            ],
            "keywords": [
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                "RNA-seq",
                "Transcriptomics"
            ],
            "prerequisites": [
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            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 10,
            "contacts": [
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                    "id": 82,
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                },
                {
                    "id": 88,
                    "name": "BioinfOmics",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api"
                }
            ],
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                {
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                    "name": "MIGALE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api"
                }
            ],
            "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png",
            "updated_at": "2025-01-29T11:32:09.198019Z",
            "type": "Training course",
            "start_date": "2025-03-17",
            "end_date": "2025-03-19",
            "venue": "",
            "city": "Jouy-en-Josas",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2025-01-22",
            "registration_closing": "2025-03-02",
            "registration_status": "closed",
            "courseMode": "Online"
        },
        {
            "id": 653,
            "name": "Analyses Single Cell RNA-seq (ScRNA-seq) avec R",
            "shortName": "",
            "description": "Cette formation introduira notamment la librairie Seurat permettant la manipulation et l'analyse de données Single Cell RNA-seq ainsi que la visualisation des résultats d'analyse\r\n\r\n- Rappels des concepts du séquençage Single Cell RNA-seq\r\n- Importation des données Single Cell dans R\r\n- Intégration de données Single Cell multiples\r\n- Quality Check et pré-traitement des données\r\n- Normalisation de données\r\n- Identification de marqueurs\r\n- Clustering et assignation cellulaire\r\n- Analyse différentielle des groupes cellulaires\r\n- Savoir intégrer les données de spatialisation\r\n- Savoir intégrer les données de trajectoire\r\n- Savoir intégrer les données de communication cellulaire\r\n- Savoir intégrer les données d'épigénétique (ATAC-seq)",
            "homepage": "https://cnrsformation.cnrs.fr/analyses-single-cell-rna-seq-scrna-seq-avec-r?axe=176",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "Bioinformatics & Biomedical",
                "R Language",
                "R",
                "NGS Sequencing Data Analysis"
            ],
            "prerequisites": [
                "Basic knowledge of R",
                "R programming"
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