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            "end_date": "2025-04-16",
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            "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [],
            "keywords": [
                "Linux",
                "Cluster"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 10,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api"
            ],
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            "organisedByTeams": [
                {
                    "id": 22,
                    "name": "Genotoul-bioinfo",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api"
                }
            ],
            "logo_url": null,
            "updated_at": "2023-05-17T10:14:33.722250Z",
            "type": "Training course",
            "start_date": "2022-10-11",
            "end_date": "2022-10-11",
            "venue": "",
            "city": "Castanet Tolosan",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2022-03-08",
            "registration_closing": "2022-10-04",
            "registration_status": "closed",
            "courseMode": "Online"
        },
        {
            "id": 567,
            "name": "Reproducible Research 2023",
            "shortName": "",
            "description": "The following topics and tools are covered in the course:\r\n\r\n    Data management\r\n    Project organisation\r\n    Git\r\n    Conda\r\n    Snakemake\r\n    Nextflow\r\n    R Markdown\r\n    Jupyter\r\n    Docker\r\n    Singularity\r\n\r\nAt the end of the course, students should be able to:\r\n\r\n    Use good practices for data analysis and management\r\n    Clearly organise their bioinformatic projects\r\n    Use the version control system Git to track and collaborate on code\r\n    Use the package and environment manager Conda\r\n    Use and develop workflows with Snakemake and Nextflow\r\n    Use R Markdown and Jupyter Notebooks to document and generate automated reports for their analyses\r\n    Use Docker and Singularity to distribute containerized computational environments",
            "homepage": "https://southgreenplatform.github.io/training_reproducible_research/",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "Open to South Green close collaborators",
            "maxParticipants": 13,
            "contacts": [],
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            "organisedByTeams": [
                {
                    "id": 24,
                    "name": "South Green",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api"
                }
            ],
            "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png",
            "updated_at": "2023-12-04T15:35:44.983725Z",
            "type": "Training course",
            "start_date": "2023-06-14",
            "end_date": "2023-06-16",
            "venue": "",
            "city": "Montpellier",
            "country": "",
            "geographical_range": "",
            "trainers": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/733/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/734/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/773/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/774/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/519/?format=api"
            ],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": "Onsite"
        },
        {
            "id": 497,
            "name": "Linux Avancé / Advanced Linux - 2022 Session2",
            "shortName": "Advanced Linux - 2022 Session 2",
            "description": "Objectifs\r\n- Savoir utiliser des commandes linux pour traiter de grosses quantités de données : fichiers\r\nvolumineux et/ou en grands nombres : recherche, comptage, tri, fusion, …\r\nProgramme\r\n- Introduction\r\n- Décrire (wc, grep)\r\n- Manipuler des fichiers tabulés (cut, sort)\r\n- Rechercher (grep)\r\n- Redirection / Pipeline (stdin, stdout, stderr, >, 2>, &&, |)\r\n- Recherche avancée : notion d’expression régulière (egrep)\r\n- Rechercher/Remplacer haut débit (tr, sed)\r\n- Manipulation de fichier tabulé – mode avancé (awk)\r\n- Traitement séquentiel de nombreux fichiers (for)",
            "homepage": "https://abims.sb-roscoff.fr/training/courses",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [
                "http://edamontology.org/topic_3316"
            ],
            "keywords": [],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 18,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 65,
                    "name": "SBR",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 4,
                    "name": "ABiMS",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api"
                }
            ],
            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2023-05-17T09:55:24.793130Z",
            "type": "Training course",
            "start_date": "2022-11-22",
            "end_date": "2022-11-22",
            "venue": "Station Biologique de Roscoff",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2022-10-07",
            "registration_closing": "2022-11-06",
            "registration_status": "closed",
            "courseMode": "Onsite"
        },
        {
            "id": 709,
            "name": "New session of FAIR_bioinfo_@_AuBi",
            "shortName": "New session of FAIR_bioinfo",
            "description": "Introduction aux bonnes pratiques en bio-informatique afin de pérenniser son travail de recherche.\r\n\r\nCette formation permet de découvrir les bonnes pratiques dans le cadre d’un travail nécessitant des approches programmatiques (statistiques, programmation d’outils, analyses de données biologiques). Elle s’inscrit aussi dans l’aspect science-ouverte afin de rendre plus facilement disponible et pérenne le travail bio-informatique. Après une introduction aux pratiques FAIR axées notamment sur les notions de reproductibilité et de répétabilité du code, plusieurs approches seront abordées: les bonnes pratiques de partage et gestion des versions des outils utilisés ; la gestion des environnements de travail (conda, docker, singularity) ; découverte du gestionnaire de workflow Snakemake : et enfin la documentation du code avec Rmarkdown et Jupyter.",
            "homepage": "https://mesocentre.uca.fr/actualites/pratiques-fair-en-bioinformatique-pour-des-analyses-reproductibles",
            "is_draft": false,
            "costs": [
                "Free to academics"
            ],
            "topics": [
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_3307",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_3068"
            ],
            "keywords": [
                "Methodology",
                "Programming Languages & Computer Sciences",
                "Cloud",
                "Linux",
                "Snakemake",
                "Docker",
                "R"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "Having an account on Mesocentre Clermont Auvergne Infrastructure",
            "maxParticipants": 16,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api"
            ],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 87,
                    "name": "AuBi",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api"
                },
                {
                    "id": 101,
                    "name": "iGReD",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/iGReD/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 31,
                    "name": "AuBi",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api"
                }
            ],
            "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175",
            "updated_at": "2025-02-17T13:11:26.183643Z",
            "type": "Training course",
            "start_date": "2025-05-19",
            "end_date": "2025-02-21",
            "venue": "",
            "city": "Aubière",
            "country": "France",
            "geographical_range": "",
            "trainers": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/522/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/525/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/807/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/818/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/819/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/820/?format=api"
            ],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2025-02-17",
            "registration_closing": "2025-05-12",
            "registration_status": "open",
            "courseMode": "Onsite"
        }
    ]
}