Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=560&ordering=-accessConditions
{ "count": 605, "next": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=580&ordering=-accessConditions", "previous": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=540&ordering=-accessConditions", "results": [ { "id": 337, "name": "Initiation à R", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-03-04", "end_date": "2017-03-05", "venue": "", "city": "Jouy en Josas", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 156, "name": "NGS et Cancer (Canceropôle) : Analyse A-RNASeq", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-13", "end_date": null, "venue": "", "city": "", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 161, "name": "Galaxy - Initiation", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-14", "end_date": null, "venue": "", "city": "ROSCOFF", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 497, "name": "Linux Avancé / Advanced Linux - 2022 Session2", "shortName": "Advanced Linux - 2022 Session 2", "description": "Objectifs\r\n- Savoir utiliser des commandes linux pour traiter de grosses quantités de données : fichiers\r\nvolumineux et/ou en grands nombres : recherche, comptage, tri, fusion, …\r\nProgramme\r\n- Introduction\r\n- Décrire (wc, grep)\r\n- Manipuler des fichiers tabulés (cut, sort)\r\n- Rechercher (grep)\r\n- Redirection / Pipeline (stdin, stdout, stderr, >, 2>, &&, |)\r\n- Recherche avancée : notion d’expression régulière (egrep)\r\n- Rechercher/Remplacer haut débit (tr, sed)\r\n- Manipulation de fichier tabulé – mode avancé (awk)\r\n- Traitement séquentiel de nombreux fichiers (for)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:55:24.793130Z", "type": "Training course", "start_date": "2022-11-22", "end_date": "2022-11-22", "venue": "Station Biologique de Roscoff", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-10-07", "registration_closing": "2022-11-06", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 190, "name": "BioHackathon 2018", "shortName": "", "description": "BioHackathon activities are driven by practical sessions where people gather, discuss, and implement ideas/projects", "homepage": "http://bh2018paris.info/index.html", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" }, { "id": 8, "name": "Elixir", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Elixir/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/elixir_node_france_0_1.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Workshop", "start_date": "2018-11-12", "end_date": "2018-11-16", "venue": "", "city": "Campus des berges de Seine", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [ { "id": 2, "name": "Using blockchain in biomedical provenance, the identifiers use case", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Using%20blockchain%20in%20biomedical%20provenance,%20the%20identifiers%20use%20case/?format=api" }, { "id": 3, "name": "Transfer of Research Assets between FAIRDOM SEEKs", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Transfer%20of%20Research%20Assets%20between%20FAIRDOM%20SEEKs/?format=api" }, { "id": 4, "name": "Support tools for rapid adoption of compact identifiers in the publishing process", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Support%20tools%20for%20rapid%20adoption%20of%20compact%20identifiers%20in%20the%20publishing%20process/?format=api" }, { "id": 5, "name": "Putting structured data into individual entry pages in biological database", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Putting%20structured%20data%20into%20individual%20entry%20pages%20in%20biological%20database/?format=api" }, { "id": 6, "name": "ProtVista (protein annotation viewer) extension using Bioschemas data", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/ProtVista%20(protein%20annotation%20viewer)%20extension%20using%20Bioschemas%20data/?format=api" }, { "id": 7, "name": "Prototyping the new PSICQUIC 2-0", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Prototyping%20the%20new%20PSICQUIC%202-0/?format=api" }, { "id": 8, "name": "Pathway effect prediction for protein targets", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Pathway%20effect%20prediction%20for%20protein%20targets/?format=api" }, { "id": 9, "name": "OmicsPath: Finding Relevant omics datasets using pathway information", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/OmicsPath:%20Finding%20Relevant%20omics%20datasets%20using%20pathway%20information/?format=api" }, { "id": 10, "name": "JSON schema validation with ontologies", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/JSON%20schema%20validation%20with%20ontologies/?format=api" }, { "id": 11, "name": "Improve Shiny and RStudio integration within Galaxy using Galaxy Interactive Environment", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Improve%20Shiny%20and%20RStudio%20integration%20within%20Galaxy%20using%20Galaxy%20Interactive%20Environment/?format=api" }, { "id": 12, "name": "Improve Orphanet disease description knowledge by phenotypic automated recognition using scrapping toolkits", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Improve%20Orphanet%20disease%20description%20knowledge%20by%20phenotypic%20automated%20recognition%20using%20scrapping%20toolkits/?format=api" }, { "id": 13, "name": "Import workflows into TeSS Concept Maps", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Import%20workflows%20into%20TeSS%20Concept%20Maps/?format=api" }, { "id": 14, "name": "Galaxy training material improvement and extension", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Galaxy%20training%20material%20improvement%20and%20extension/?format=api" }, { "id": 15, "name": "From Biotea to Bioschemas: definition of profiles required to represent scholarly publications", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/From%20Biotea%20to%20Bioschemas:%20definition%20of%20profiles%20required%20to%20represent%20scholarly%20publications/?format=api" }, { "id": 16, "name": "Exploring Pharmacogenomic LOD for Molecular Explanations of Gene-Drug Relationships", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Exploring%20Pharmacogenomic%20LOD%20for%20Molecular%20Explanations%20of%20Gene-Drug%20Relationships/?format=api" }, { "id": 17, "name": "Enrichment and propagation of metagenomic experimental metadata", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Enrichment%20and%20propagation%20of%20metagenomic%20experimental%20metadata/?format=api" }, { "id": 18, "name": "Development of BioJS components", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Development%20of%20BioJS%20components/?format=api" }, { "id": 19, "name": "Development of a GA4GH-compliant, language-agnostic workflow execution service", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Development%20of%20a%20GA4GH-compliant,%20language-agnostic%20workflow%20execution%20service/?format=api" }, { "id": 20, "name": "Development of a catalog of federated SPARQL queries in the field of Rare Diseases", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Development%20of%20a%20catalog%20of%20federated%20SPARQL%20queries%20in%20the%20field%20of%20Rare%20Diseases/?format=api" }, { "id": 21, "name": "Data clearinghouse, validation and curation of BioSamples - ENA - Breeding API endpoints - MAR databases", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Data%20clearinghouse,%20validation%20and%20curation%20of%20BioSamples%20-%20ENA%20-%20Breeding%20API%20endpoints%20-%20MAR%20databases/?format=api" }, { "id": 22, "name": "CWL support in Galaxy", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/CWL%20support%20in%20Galaxy/?format=api" }, { "id": 23, "name": "Building a semantic search engine for biology publications using event stream processing", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Building%20a%20semantic%20search%20engine%20for%20biology%20publications%20using%20event%20stream%20processing/?format=api" }, { "id": 24, "name": "bio-tools - EDAM drop-in hackathon - discussions", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/bio-tools%20-%20EDAM%20drop-in%20hackathon%20-%20discussions/?format=api" }, { "id": 25, "name": "Bioconda packaging of the Regulatory Sequence Analysis Tools (RSAT)", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Bioconda%20packaging%20of%20the%20Regulatory%20Sequence%20Analysis%20Tools%20(RSAT)/?format=api" }, { "id": 26, "name": "Assessing the FAIRness of Training Materials", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Assessing%20the%20FAIRness%20of%20Training%20Materials/?format=api" }, { "id": 27, "name": "Application of RDF-based models and tools for enhancing interoperable", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Application%20of%20RDF-based%20models%20and%20tools%20for%20enhancing%20interoperable/?format=api" }, { "id": 28, "name": "Alternative episodes for the 4 Open Source Software", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Alternative%20episodes%20for%20the%204%20Open%20Source%20Software/?format=api" }, { "id": 29, "name": "Adding bioschemas markup to data repository", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Adding%20bioschemas%20markup%20to%20data%20repository/?format=api" }, { "id": 30, "name": "Welcome message", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Welcome%20message/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 201, "name": "Gestion de données en Python - Avancé ", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2019-03-02", "end_date": "2019-03-03", "venue": "", "city": "Roscoff", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 20, "name": "How to use South Green HPC (IRD cluster)?", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-02-07", "end_date": null, "venue": "", "city": "Centre IRD Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 601, "name": "Introduction to Linux", "shortName": "Introduction to Linux - BiRD", "description": "Objectives\r\n- Understand the principles and advantages of the Linux system\r\n- Know and use the main bash commands. Ability to chain multiple commands using pipes\r\n- Launch programs with arguments\r\n- Gain independence to perform command line analyses\r\n\r\nPedagogical Content\r\n- Introduction to the Linux system.\r\n- File system: directory structure, paths, home directory, file and directory management.\r\n- Principle of protections: reading file attributes, access rights, management of user groups.\r\n- Shell usage: command reminders, input/output redirection, history, completion, launching programs with arguments.\r\n- Commands relevant to bioinformatics: grep, cut, sed, sort, more, etc.\r\n- Connection (ssh) - how to start a session from Linux or Windows PowerShell", "homepage": "https://pf-bird.univ-nantes.fr/training/", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg", "updated_at": "2024-02-19T09:37:34.209594Z", "type": "Training course", "start_date": "2024-03-18", "end_date": "2024-03-18", "venue": "Faculté de Pharmacie - Salle 450, 4ème étage", "city": "Nantes", "country": "", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-02-08", "registration_closing": "2024-03-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 400, "name": "Diplôme Universitaire en Bioinformatique Intégrative - session 2020 / University Diploma in Integrative Bioinformatics - 2020 session", "shortName": "DUBii 2020", "description": "La bioinformatique est devenue une compétence incontournable pour l'analyse de données de nature diverse : génomes, transcriptomes, protéomes, métabolomes, structures macromoléculaires, réseaux d'interactions. L'appropriation par les biologistes des méthodes et outils de biostatistique et bioinformatique intégrative est un enjeu majeur pour la montée en compétence des équipes de recherche et des plateformes de service. L'université Paris Diderot propose en partenariat avec l'Institut Français de Bioinformatique (IFB) la deuxième édition du Diplôme Universitaire en Bioinformatique intégrative (DU-Bii). Cette formation s’adresse en priorité à des biologistes en demande d'évolution ou de reconversion professionnelle ayant déjà acquis des compétences (formation courte, autoapprentissage, expérience de terrain) en informatique ou bioinformatique/biostatistique (environnement Unix, Python ou R ou autre langage de programmation). Les prérequis sont décrits sur le portail “DU” de l’université Paris Diderot, qui présente le DU-Bii et le DU complémentaire \"Création, Analyse et Valorisation de données omiques\" (DUO) : voir la page dédiée. Le DU-Bii fournira une formation théorique et pratique, complétée par une période d'immersion sur l'une des plateformes régionales de l'IFB, qui mobilisera, dans le cadre d'un projet tutoré, l'ensemble des méthodes et outils appris durant les cours pour réaliser un projet personnel de bioinformatique intégrative. Ce projet combinera des données propres à chaque participant produites dans son laboratoire (principe BYOD : “Bring Your Own Data”) ou collectées à partir de bases de données publiques. Cette formation se déroulera pendant 8 semaines réparties entre : Les cours : 4 semaines à raison de 4 jours/semaine en présentiel (96h) du 2 mars au 2 avril 2020 avec 1 semaine de césure la semaine 12). Le projet tutoré : 20 jours sur l'une des plateformes bioinformatique de l'IFB, à répartir entre le 6 avril et le 19 juin 2020.\r\nRenseignements et candidatures : fcsdv@univ-paris-diderot.fr\r\nInscriptions : voir la page page du DU-Bii de l'Université Paris Diderot\r\nContacts Paris-Diderot : Bertrand.Cosson@univ-paris-diderot.fr \r\nContacts IFB : Helene.Chiapello@inra.fr, Jacques.van-Helden@univ-amu.fr", "homepage": "https://ressources.france-bioinformatique.fr/fr/diplome-universitaire-en-bioinformatique-integrative-du-bii-2020", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 15, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" }, { "id": 28, "name": "Université Paris-Diderot", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Universit%C3%A9%20Paris-Diderot/?format=api" } ], "organisedByTeams": [], "logo_url": null, "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2020-03-02", "end_date": "2020-11-18", "venue": "Université Paris Diderot", "city": "Paris", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2019-11-05", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 52, "name": "Bioinformatique pour le traitement de données de séquençage (NGS)", "shortName": "", "description": "Bioinformatics for NGS data analysis", "homepage": "http://cnrsformation.cnrs.fr/stage-17010-Bioinformatique-pour-le-traitement-de-d…", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/logo-cnrs_0_0.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-03-27", "end_date": "2017-03-31", "venue": "", "city": "Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 108, "name": "Survival Guide for Perl applied to Bioinformatics", "shortName": "", "description": "This course provides an introduction to programming using Perl.", "homepage": "https://southgreenplatform.github.io/trainings//perl/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-10-01", "end_date": "2017-10-05", "venue": "", "city": "ISRA, Bel Air, Dakar (Sénégal)", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 511, "name": "New session of Molecular Phylogeny - Level 2", "shortName": "New session of Phylogénie moléculaire - Niveau 2", "description": "OBJECTIF\r\n- Être capable de tester des hypothèses et d'ajuster des modèles permettant de comprendre l'évolution à l'échelle moléculaire\r\n\r\nPRÉREQUIS\r\n- Avoir déjà utilisé les logiciels de base en phylogénie moléculaire\r\n- Maîtriser les notions de base en statistiques (tests statistiques, principe du bootstrap, intervalles de confiances, etc.) et de probabilités (probabilités jointes / conditionnelles, théorème de Bayes, etc.)\r\n- Maîtriser un langage de programmation\r\n- Notions de phylogénie moléculaire\r\nAvoir suivi le stage \"Phylogénie moléculaire - formation de base\" ou niveau équivalent \r\n\r\nPROGRAMME\r\n- Phylogénétique et génétique des populations\r\n- Détection de sélection positive au sein de séquences codantes\r\n- Datation moléculaire : intégrer fossiles et molécules\r\n- Phylogénomique\r\n- Super-arbres et super-matrices, réconciliations d'arbres\r\n- Visualisation de l'information en phylogénie\r\n- Placement phylogénétique\r\n- Bases d'épidémiologie (modèles en compartiments, ODE, applications, etc)\r\n- Simulations selon une variété de modèles épidémiologiques\r\n- Phylodynamique : combiner épidémiologie et évolution", "homepage": "https://cnrsformation.cnrs.fr/liste-stages-176-Bioinformatique.html", "is_draft": false, "costs": [ "Priced", "1200 €" ], "topics": [], "keywords": [ "Phylogeny", "Selection Detection", "Phylogenomics" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/282/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "http://www.atgc-montpellier.fr/pictures/ATGClogo.svg", "updated_at": "2023-10-05T12:36:32.255069Z", "type": "Training course", "start_date": "2023-10-04", "end_date": "2023-10-06", "venue": "", "city": "Montpellier", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 206, "name": "Marseille Hackathon Training Event", "shortName": "", "description": " 3-days training session / hackathon in Marseille", "homepage": "https://www.greekc.org/activity/marseille-training-event/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 10, "name": "GREEKC", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/GREEKC/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/Logotype_pictogramme-128.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2019-04-23", "end_date": "2019-04-26", "venue": "", "city": "Faculté des science de Luminy, Marseille", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 498, "name": "Utilisation du cluster - SLURM / Cluster usage - SLURM - 2022 Session 2", "shortName": "Cluster SLURM - 2022 Session 2", "description": "Objectifs\r\n- Disposer des concepts et de bonnes pratiques d’utilisation des ressources de calcul.\r\n- Être capable d’utiliser les ressources de calcul de la plateforme en toute autonomie.\r\nProgramme\r\n- Introduction : les équipements (calcul et stockage), espaces de travail, les outils et les données.\r\n- Calcul parallèle : concepts, ressources\r\n- Soumission de jobs (srun, sbatch)\r\n- Monitorer, vérifier, controler les jobs (squeue, scontrol, scancel, sacct).\r\n- Base de l’optimisation d’un job\r\n- Solutions de parallélisation des jobs : (--array)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:55:11.578705Z", "type": "Training course", "start_date": "2022-11-23", "end_date": "2022-11-23", "venue": "Station Biologique de Roscoff", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-10-07", "registration_closing": "2022-11-06", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 382, "name": " Linux For Jedi", "shortName": "", "description": "This course offers to develop and enhance advanced Linux shell command line and scripting skills for the processing and analysis of NGS data. We will work on a HPC server and use linux powerful commands to allow to analyze big amount of biological data.\n \nPrerequisites\nBasic knowledge of Linux (Linux for dummies required)\n\nProgram\nConnecting to a distant HPC\nManipuling text files\nComplex searching for text in a file\nCombining several commands\nWriting simple shell scripts\n\n\nLearning objectives\nAfter this course, participants should be able to:\nManipulate and search within text files\nChain and combine commands\nPerform the same actions on many files\nWrite a simple shell script\n\n\n \n\n\nInstructors\nChristine Tranchant (CT) - christine.tranchant@ird.fr\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBruno Granouillac (BG) - bruno.granouillac@ird.fr\nFrançois Sabot (SB) - francois.sabot@ird.fr\nGautier Sarah (GS) - gautier.sarah@cirad.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings/linuxJedi/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-12", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 84, "name": "Python for Biology", "shortName": "", "description": "Formantion payante du catalogue CNRS", "homepage": "https://cnrsformation.cnrs.fr/stage-17266-Python-pour-la-biologie.html", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/cbib.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-06-06", "end_date": "2017-06-08", "venue": "", "city": "CBiB, Bordeaux", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 170, "name": "Launching ProteoRE infrastructure", "shortName": "", "description": "IFB is launching a galaxy user-oriented web-based platform for MS-based proteomics data exploration", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/proteore.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Conference", "start_date": "2018-05-04", "end_date": null, "venue": "", "city": "", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 87, "name": "Formation librairie GATB", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-06-15", "end_date": null, "venue": "", "city": "Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 176, "name": "Integrative Bioinformatics Symposium 2018", "shortName": "", "description": "Bring together experts in the field of bioinformatics, computer science, statistics, computational and systems biology", "homepage": "https://www.rothamsted.ac.uk/events/14th-international-symposium-integrative-bio…", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 8, "name": "Elixir", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Elixir/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/Logo_elixir.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Conference", "start_date": "2018-06-13", "end_date": "2018-06-15", "venue": "", "city": "Rothamsted Research, Harpenden, England, United Kingdom", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 78, "name": "RNASeq with Galaxy", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-05-22", "end_date": "2017-05-23", "venue": "", "city": "Roscoff", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null } ] }
