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            "description": "Objectifs\r\nLa formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS), pour l'assemblage et l'annotation de novo de génomes. Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour des différentes étapes qui mèneront à l’obtention d’un génome annoté à partir de données “long reads” et “hybride” : contrôle qualité des données, assemblage, scaffolding, polishing, annotation structurale et fonctionnelle (en session parallèle pour les procaryotes et les eucaryotes). \r\nL’école vise à introduire les concepts, à manipuler les outils informatiques et à en interpréter les résultats. Elle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données ou de celles de leur équipe.\r\nAttention : le tutorat n'a pas pour vocation de réaliser l’analyse complète des données des participants.\r\nPublic visé\r\nCette formation est destinée aux biologistes (ingénieurs, doctorants, chercheurs, enseignants-chercheurs, praticiens…) confrontés à l’analyse de données NGS, et qui ne disposent pas des compétences bioinformatiques suffisantes.",
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            "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.",
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            "id": 643,
            "name": "Artificial Intelligence and Machine Learning in Life Sciences: from foundations to applications 2025",
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            ],
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            ],
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            ],
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            ],
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            ],
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            "logo_url": "https://www.dissco.eu/wp-content/uploads/Elixir-Europe-logo-1-300x226.png",
            "updated_at": "2024-12-19T15:43:33.918124Z",
            "type": "Training course",
            "start_date": "2025-05-19",
            "end_date": "2025-05-23",
            "venue": "CAES Centre Paul-Langevin",
            "city": "Aussois",
            "country": "France",
            "geographical_range": "International",
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            "realisation_status": "future",
            "registration_opening": "2024-12-18",
            "registration_closing": "2025-01-24",
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        {
            "id": 467,
            "name": "Formation IFB Science Ouverte & PGD - Comment gérer des jeux de données haut-débit en sciences de la vie et de la santé - édition Strasbourg - Session 1 (mars 2022)",
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            "description": "Cette formation, à destination de bioinformaticiens et biologistes, présente les principes FAIR de gestions de données dans un projet de bioinformatique ou de biologie.Elle aborde les différents points fondamentaux (théoriques, pratiques, juridiques) en lien avec la politique nationale d’ouverture des données de la recherche et présente sous forme de séances pratiques les ressources nationales accessibles à la communauté scientifique ainsi que les solutions proposées pour gérer les données d’un projet de recherche.",
            "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=10",
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            "costs": [
                "Free"
            ],
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                "none"
            ],
            "openTo": "Everyone",
            "accessConditions": "This training is dedicated for academics in Strasbourg area",
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            ],
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                    "id": 83,
                    "name": "IGBMC",
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                },
                {
                    "id": 84,
                    "name": "ICube",
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            ],
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                    "id": 14,
                    "name": "BiGEst",
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            ],
            "logo_url": null,
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2022-03-23",
            "end_date": "2022-03-24",
            "venue": "IGBMC\r\n1 Rue Laurent Fries\r\n67400 Illkirch-Graffenstaden",
            "city": "Illkirch Graffenstaden",
            "country": "France",
            "geographical_range": "Local",
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            ],
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        },
        {
            "id": 281,
            "name": "Cycle « Analyse de données de séquençage à haut-débit » - Module 5/5 : Métagénomique",
            "shortName": "",
            "description": "Bilille propose chaque année un cycle de formation d'introduction à l'analyse des données de séquençage à haut débit.\r\nCe cycle est composé de 5 modules, à la carte : \r\n- Module 1: Analyses ADN\r\n- Module 2: Analyses de variants\r\n- Module 3: Analyses RNA-seq, bioinformatique\r\n- Module 4: Analyses RNA-seq, biostatistique\r\n- Module 5: Métagénomique\r\nLes fiches descriptives sont accessibles sur le site de Bilille. Chaque module comprend des présentations générales et des séances pratiques sur ordinateur, avec Galaxy.\r\nLes objectifs du module 5 sont :\r\n- Connaître les différentes méthodes de séquençage à haut débit pour la métagénomique, avec leurs avantages et leurs limites : métagénomique ciblée, métagénomique génomes entiers, métatranscriptomique\r\n- Comprendre les différentes étapes analytiques du traitement bioinformatique des données et savoir les mettre en œuvre\r\n- Savoir conduire une analyse statistique pour l’estimation de la richesse de la biodiversité\r\n- Aller jusqu’aux conclusions biologiques",
            "homepage": "https://bilille.univ-lille.fr/training/training-offer",
            "is_draft": false,
            "costs": [
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            ],
            "topics": [],
            "keywords": [
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                "Metagenomics",
                "Assembly of genomes and transcriptomes",
                "Read alignment on genomes",
                "metatranscriptomics",
                "NGS Sequencing Data Analysis"
            ],
            "prerequisites": [
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            ],
            "openTo": "Internal personnel",
            "accessConditions": "- Etre familier avec la plate-forme web Galaxy (idéalement avoir suivi la formation bilille « Initiation à Galaxy »)\r\n- Avoir suivi le module 1/5 « Analyses ADN » de ce cycle ou toute autre formation permettant de justifier de connaissances sur les données de séquençage haut débit et leur alignement. Etre familier avec le vocabulaire et les étapes de base de l’analyse de données de séquençage : nettoyage, assemblage, mapping",
            "maxParticipants": null,
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                    "id": 52,
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                },
                {
                    "id": 56,
                    "name": "INSERM",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api"
                },
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                    "id": 66,
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                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/UDL/?format=api"
                }
            ],
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                    "id": 3,
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            ],
            "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png",
            "updated_at": "2024-12-09T17:38:01.340793Z",
            "type": "Training course",
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            "end_date": "2019-11-21",
            "venue": "",
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        {
            "id": 675,
            "name": "Cycle « Analyse de données de séquençage à haut-débit » - Module Analyses ChIP-seq  (sous Galaxy)- session Juin 2024",
            "shortName": "",
            "description": "Bilille, la plateforme de bioinformatique, biostatistique et bioanalyse de la métropole lilloise, propose chaque année un cycle de formation d'introduction à l'analyse des données de séquençage à haut débit.\r\nCe cycle est composé des modules suivants, à la carte : \r\n- Analyses ADN\r\n- Analyses de variants\r\n- Métagénomique\r\n- Analyses ChIP-seq\r\n- Analyses RNA-seq\r\nLes fiches descriptives sont accessibles sur le site de bilille. Chaque module comprend des présentations générales et des séances pratiques sur ordinateur, avec Galaxy.\r\n\r\nLes objectifs du module Analyses ChIP-seq sont :\r\n Savoir analyser des données de ChIP-seq, du peak-calling à la découverte de motifs :\r\n-\tSavoir détecter les pics et obtenir un signal\r\n-\tComprendre les différentes structures de données\r\n-\tSavoir effectuer les contrôles qualité\r\n-\tSavoir effectuer une analyse d’enrichissement de motifs\r\n-\tEtre capable de préparer ses résultats pour leur annotation\r\n-\tComprendre comment croiser plusieurs résultats de ChIP-seq",
            "homepage": "https://bilille.univ-lille.fr/training/training-offer",
            "is_draft": false,
            "costs": [
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            ],
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            "openTo": "Internal personnel",
            "accessConditions": "-\tEtre familier avec la plate-forme web Galaxy (idéalement avoir suivi la formation Bilille « Initiation à Galaxy »)\r\n-\tAvoir suivi le module 1/5 « Analyses ADN » de ce cycle ou toute autre formation permettant de justifier de connaissances sur les données de séquençage haut débit et leur alignement",
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            ],
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            ],
            "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png",
            "updated_at": "2024-12-09T17:34:50.625554Z",
            "type": "Training course",
            "start_date": "2024-06-06",
            "end_date": "2024-06-07",
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    ]
}