Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=540&ordering=-openTo
{ "count": 675, "next": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=560&ordering=-openTo", "previous": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=520&ordering=-openTo", "results": [ { "id": 481, "name": "Statistiques avec R / Statistics with R - 2022 Session 1", "shortName": "R - Stats - 2022 S1", "description": "Objectifs\r\n- Choisir un test statistique adapté à un problème donné.\r\n-\r\nImporter des données et réaliser un test avec R.\r\nProgramme\r\n- Théorie : modèle, loi de distribution, hypothèse H0, variable de test, p-value, tests multiples, FDR\r\n- Pratique : réalisation de tests sous R dans un environnement convivial (RStudio)\r\n-\r\ntests usuels simples : Gauss, Student, χ2\r\n-\r\ntests multiples : ANOVA, correction (ex. Student multiple), tests spécifiques (ex. SAM)", "homepage": "http://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_2269" ], "keywords": [], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/299/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2022-05-03", "end_date": null, "venue": "https://www.sb-roscoff.fr/fr/station-biologique-de-roscoff/services/venir-a-la-sbr", "city": "Roscoff", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-03-09", "registration_closing": "2022-04-10", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 405, "name": "4th Workshop Single-Cell / SincellTE 2022 / Single-Cell : Transcriptomics, Spatial and Multi-Omics", "shortName": "SincellTE 2022", "description": "This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.", "homepage": "https://www.france-bioinformatique.fr/formation/single-cell-2022/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [ "Master", "Autre (Diplôme universitaire, école d'ingénieur ...)" ], "openTo": "Everyone", "accessConditions": "None", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2.png", "updated_at": "2022-09-15T13:10:14.790898Z", "type": "Training course", "start_date": "2022-01-09", "end_date": "2022-01-14", "venue": "Roscoff Biological Station\r\nPlace Georges Teissier", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2021-09-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 519, "name": "Initiation à Galaxy / Galaxy Initiation - Session 1 - 2023", "shortName": "Galaxy Initiation - 2023 S1", "description": "Objectifs\r\n- Savoir exploiter l’environnement Galaxy pour être en mesure d’analyser ses données.\r\n- Être en mesure de créer ses workflows.\r\nProgramme\r\n- Téléchargement des données à traiter.\r\n- Manipulation de fichiers.\r\n- Traitement des données.\r\n- Visualisation des résultats.\r\n- Création de workflows.\r\n- Partage de résultats et de workflows.", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0769" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:27:23.408861Z", "type": "Training course", "start_date": "2023-06-19", "end_date": "2023-06-19", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-02-22", "registration_closing": "2023-05-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 667, "name": "LINUX - session 11 March 2025", "shortName": "", "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.", "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2-2/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-12-06T20:39:17.845500Z", "type": "Training course", "start_date": "2025-03-11", "end_date": "2025-03-11", "venue": "", "city": "castanet-tolosan", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-12-06", "registration_closing": "2025-03-04", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 509, "name": "New session of Molecular Phylogeny - Level 1", "shortName": "New session of Phylogénie moléculaire - Niveau 1", "description": "OBJECTIF\r\n- Savoir inférer un arbre phylogénétique et l'interpréter\r\n\r\nPRÉREQUIS\r\n- Savoir ce à quoi correspondent des séquences génétiques homologues\r\n- Avoir déjà utilisé les logiciels de base en bioinformatique\r\n- Connaître les notions de base en statistiques (tests, lois probabilistes usuelles, méthodes simples d'estimation de paramètres)\r\n- Avoir des notions de programmation\r\n\r\nPROGRAMME\r\n- Lignes de commandes Linux\r\n- Le format Newick\r\n- Dessin d'arbres\r\n- Alignements multiples et nettoyage\r\n- Modèles d'évolution\r\n- Choix de modèles\r\n- Définitions et propriétés des arbres\r\n- Méthodes de parcimonie\r\n- Méthodes de distance\r\n- Maximum de vraisemblance\r\n- Reconstruction phylogénétique Bayésienne\r\n- Bootstraps et autres supports de branches", "homepage": "https://cnrsformation.cnrs.fr/liste-stages-176-Bioinformatique.html", "is_draft": false, "costs": [ "1200 €" ], "topics": [ "http://edamontology.org/topic_3299", "http://edamontology.org/topic_0084", "http://edamontology.org/topic_3293" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/241/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "http://www.atgc-montpellier.fr/pictures/ATGClogo.svg", "updated_at": "2023-10-05T12:37:00.397895Z", "type": "Training course", "start_date": "2023-03-29", "end_date": "2023-03-31", "venue": "", "city": "Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 529, "name": "Cluster - session 18/04/2023", "shortName": "", "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.", "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/", "is_draft": false, "costs": [ "Priced", "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [], "keywords": [ "Linux", "Cluster" ], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2023-05-17T10:03:57.925413Z", "type": "Training course", "start_date": "2023-04-18", "end_date": "2023-04-18", "venue": "", "city": "", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-04-04", "registration_closing": "2023-04-12", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 752, "name": "Linux - 24 mars 2026", "shortName": "", "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/linux-2-2/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2026-02-02T09:40:36.591559Z", "type": "Training course", "start_date": "2026-03-24", "end_date": "2026-02-24", "venue": "", "city": "Castanet-Tolosan", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [ { "id": 137, "name": "Linux slides - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20slides%20-%20Genotoul-bioinfo/?format=api" }, { "id": 138, "name": "Linux TP - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20TP%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2026-01-14", "registration_closing": "2026-02-10", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 510, "name": "New session of Bioinformatique pour le traitement de données de séquençage (NGS) : analyse de transcriptome", "shortName": "", "description": "OBJECTIFS\r\n- Comprendre les principes des méthodes d'analyse de données de séquençage à haut débit\r\n- Comprendre les résultats obtenus, les paramètres et leurs impacts sur les analyses\r\n- Savoir choisir et utiliser les principaux outils d'analyse\r\n- Être autonome pour utiliser un pipeline d'analyse\r\n- Savoir manipuler les fichiers de séquences : préparation et filtration\r\n- Savoir évaluer la qualité des données\r\n- Savoir analyser les résultats avec ou sans génome de référence\r\n\r\nPRÉREQUIS\r\n- Notions de base en informatique : fichiers, répertoire...\r\n- Notions du système linux et des lignes de commande\r\n- Niveau master \r\n\r\nPROGRAMME\r\n- Linux : commandes de base\r\n- Les données NGS : fichiers, manipulation de base, nettoyage\r\n- Mapping : principaux outils et pratique\r\n- Transcriptomique :\r\n. analyse de RNA-seq : expression différentielle des gènes / des ARNs (comptage et DESeq2) ; comparaison d'échantillons issus de conditions différentes\r\n. post-analyse : analyse GO, interrogation bases de connaissances (ex : KEGG), création de graphique (en R)\r\n. analyse couplée transcriptome / traductome", "homepage": "https://cnrsformation.cnrs.fr/liste-stages-176-Bioinformatique.html", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "PUBLICS :\r\n- Biologistes, professionnels des sciences du vivant ayant besoin d'analyser des données de séquençage\r\n- Ingénieurs ou chercheurs en bioinformatique\r\n- Bioanalystes\r\n \r\nPRÉREQUIS\r\n- Notions de base en informatique : fichiers, répertoire...\r\n- Notions du système linux et des lignes de commande\r\n- Niveau master", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/528/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "http://www.atgc-montpellier.fr/pictures/ATGClogo.svg", "updated_at": "2023-10-05T12:36:48.888153Z", "type": "Training course", "start_date": "2023-03-27", "end_date": "2023-03-29", "venue": "", "city": "Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 633, "name": "Cluster - session 08/10/2024", "shortName": "", "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.", "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/", "is_draft": false, "costs": [ "Priced", "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [], "keywords": [ "Linux", "Cluster" ], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-06-05T09:19:16.493620Z", "type": "Training course", "start_date": "2024-10-08", "end_date": "2024-10-08", "venue": "", "city": "castanet-tolosan", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api" ], "trainingMaterials": [ { "id": 139, "name": "Cluster Slides - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Cluster%20Slides%20-%20Genotoul-bioinfo/?format=api" }, { "id": 140, "name": "Cluster TP - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Cluster%20TP%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-06-05", "registration_closing": "2024-10-01", "registration_status": "closed", "courseMode": "Online" }, { "id": 499, "name": "Linux - Initiation / Linux for Beginners - 2022 Session 2", "shortName": "Linux Init - 2022 Session 2", "description": "Objectifs :\r\n- Être capable de se connecter à une machine Linux\r\n- Être capable de transférer des fichiers à partir de/vers une machine Linux\r\n- Être capable de naviguer dans le système de fichiers\r\n- Être capable d’examiner le contenu d’un fichier et de gérer l’espace disque\r\n- Être capable de gérer les droits d’accès aux répertoires et aux fichiers.\r\n- Être capable de gérer le lancement, l’interruption et l’arrêt de processus", "homepage": "http://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [ "Linux", "Operating systems" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 16, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:55:01.623771Z", "type": "Training course", "start_date": "2022-11-21", "end_date": "2022-11-21", "venue": "Station Biologique de Roscoff", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-10-07", "registration_closing": "2022-11-06", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 668, "name": "Cluster - 12 March 2025", "shortName": "", "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.", "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/", "is_draft": false, "costs": [ "Priced", "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [], "keywords": [ "Linux", "Cluster" ], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "You need to register (via the website) and pay 170 euros a day for academic and 550 euros a day for a private.", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-12-06T20:50:57.555838Z", "type": "Training course", "start_date": "2025-03-12", "end_date": "2025-03-12", "venue": "", "city": "castanet-tolosan", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [ { "id": 139, "name": "Cluster Slides - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Cluster%20Slides%20-%20Genotoul-bioinfo/?format=api" }, { "id": 140, "name": "Cluster TP - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Cluster%20TP%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-12-06", "registration_closing": "2025-03-05", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 754, "name": "RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - 30 mars 2026", "shortName": "RNASeq bioinfo / biostat - 30 mars 2026", "description": "The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_0203", "http://edamontology.org/topic_3308" ], "keywords": [ "NGS Data Analysis", "Expression" ], "prerequisites": [ "Linux/Unix", "Cluster", "Langage R de base" ], "openTo": "Everyone", "accessConditions": "Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 33, "name": "Genotoul-biostat", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-biostat/?format=api" }, { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2026-02-02T09:41:25.705694Z", "type": "Training course", "start_date": "2026-03-30", "end_date": "2026-04-02", "venue": "", "city": "Castanet-Tolosan", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [ { "id": 135, "name": "Training RNASeq - bioinfo part - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20bioinfo%20part%20-%20Genotoul-bioinfo/?format=api" }, { "id": 136, "name": "Training RNASeq - biostat part - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20biostat%20part%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2026-01-14", "registration_closing": "2026-02-14", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 508, "name": "Principes FAIR dans un projet de bioinformatique - Session 2023", "shortName": "FAIR_bioinfo_2023", "description": "L’Institut Français de Bioinformatique (IFB) organise en partenariat avec l’Institut de Biologie Intégrative de la Cellule (I2BC) une formation à destination des bioinformaticiens et biostatisticiens souhaitant mettre en oeuvre les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) dans leurs projets d’analyse et de développement. Les concepts FAIR, initialement définis dans le contexte d’ouverture des données de la recherche, seront ici adaptés pour cadrer avec un projet type de développement et/ou analyse bioinformatique/biostatistique. Ainsi, la formation n’abordera pas les aspects “FAIR” spécifiques aux données mais introduira plusieurs outils permettant d’améliorer la reproductibilité des analyses.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=19", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0769" ], "keywords": [ "FAIR", "Computing Environments", "NGS Sequencing Data Analysis", "Workflow development" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 15, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [ { "id": 1, "name": "Training", "url": "https://catalogue.france-bioinformatique.fr/api/elixirplatform/Training/?format=api" } ], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://www.france-bioinformatique.fr/wp-content/uploads/logo-ifb-couleur.svg", "updated_at": "2023-10-16T08:28:12.972795Z", "type": "Training course", "start_date": "2023-10-09", "end_date": "2023-10-11", "venue": "Institut des Systèmes Complexes", "city": "Paris", "country": "France", "geographical_range": "National", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/697/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/605/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-04-03", "registration_closing": "2023-05-30", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 684, "name": "Introduction au language R / Introduction to R langage : 2025", "shortName": "Introduction to R langage : 2025", "description": "Objectifs pédagogiques :\r\nÀ l’issue de la formation, les stagiaires connaîtront les principales fonctionnalités du langage R et ses principes. Ils seront capables de les appliquer pour effectuer des calculs ou des représentations graphiques simples. Ils seront de plus autonomes pour manipuler leurs tableaux de données.\r\nAttention : ce module n’est ni un module de statistique, ni un module d’analyse statistique des données.\r\n\r\nProgramme :\r\n* Structures et manipulation de données\r\n* Principaux éléments du langage de programmation (boucle, fonctions…)\r\n* Différentes représentations graphiques de données/résultats (plot, histogramme, boxplot)", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "R Language" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2025-01-23T15:16:06.070589Z", "type": "Training course", "start_date": "2025-03-11", "end_date": "2025-03-12", "venue": "", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2025-01-22", "registration_closing": "2025-02-24", "registration_status": "closed", "courseMode": "Online" }, { "id": 518, "name": "Statistiques avec R / Statistics with R - Session 1 - 2023", "shortName": "R - Stats 2023 S1", "description": "Objectifs\r\n- Choisir un test statistique adapté à un problème donné.\r\n-\r\nImporter des données et réaliser un test avec R.\r\nProgramme\r\n- Théorie : modèle, loi de distribution, hypothèse H0, variable de test, p-value, tests multiples, FDR\r\n- Pratique : réalisation de tests sous R dans un environnement convivial (RStudio)\r\n-\r\ntests usuels simples : Gauss, Student, χ2\r\n-\r\ntests multiples : ANOVA, correction (ex. Student multiple), tests spécifiques (ex. SAM)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_2269" ], "keywords": [], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:27:31.911754Z", "type": "Training course", "start_date": "2023-06-01", "end_date": "2023-06-01", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-02-22", "registration_closing": "2023-04-30", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 603, "name": "RNASeq Analysis", "shortName": "RNASeq Analysis", "description": "Objectives\r\n- Understand the key steps in RNASeq data analysis for a differential expression study\r\n- Know how to perform command-line analysis using Snakemake.\r\n\r\nPedagogical Content\r\nDay 1\r\n- Principle of RNASeq technology: objectives and experimental design.\r\n- Data quality assessment (FastQC, MultiQC).\r\n- Sequence alignment to a reference genome (STAR).\r\n\r\nDay 2\r\n- Differential gene expression analysis (HTSeqCount, DESeq2).\r\n- Functional annotation (GO, Kegg).\r\n- Using the Snakemake workflow system.\r\n- Comparison between RNASeq and 3’SRP methods.\r\n\r\nThe theoretical part is followed by a pipeline run step-by-step on a test dataset. \r\nIt will be possible to start an analysis on your own data.", "homepage": "https://pf-bird.univ-nantes.fr/training/rnaseq/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "Familiarity with basic Linux commands.", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg", "updated_at": "2024-02-19T09:37:13.928843Z", "type": "Training course", "start_date": "2024-03-20", "end_date": "2024-03-21", "venue": "", "city": "Nantes", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-02-08", "registration_closing": "2024-03-18", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 789, "name": "Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy - 2026", "shortName": "Analyse de données NGS sous Galaxy 2026", "description": "Objectifs pédagogiques\r\nConnaître les concepts et méthodes bioinformatiques utilisés pour l’analyse primaire de données issues de séquenceurs nouvelle génération (NGS). Savoir effectuer un alignement sur un génome de référence, un assemblage de novo d’un génome bactérien\r\n\r\nProgramme\r\nThéorie\r\n* Présentation des différents types de technologies de séquençage (lectures longues et courtes)\r\n\r\nPratique : Analyse des données de séquençage d’un génome bactérien\r\n* Contrôle qualité\r\n* Assemblage de-novo\r\n* Nettoyage des données\r\n* Assemblage\r\n* Visualisation et statistiques sur l’assemblage\r\n* Alignement de lectures sur un génome de référence et visualisation\r\nTous les TPs seront réalisés sous l’environnement d’exécution de traitements Galaxy.", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0092", "http://edamontology.org/topic_0196", "http://edamontology.org/topic_3168", "http://edamontology.org/topic_0102" ], "keywords": [ "Galaxy", "NGS" ], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2026-02-12T10:33:27.380562Z", "type": "Training course", "start_date": "2026-03-26", "end_date": "2026-03-26", "venue": "", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2026-03-12", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 587, "name": "Analyse statistique de données RNA-Seq - Recherche des régions d’intérêt différentiellement exprimées (2024)", "shortName": "Analyse statistique de données RNA-Seq (2024)", "description": "Objectifs pédagogiques\r\n* Se sensibiliser aux concepts et méthodes statistiques pour l’analyse de données transcriptomiques de type RNA-Seq.\r\n* Comprendre le matériel et méthodes (normalisation et tests statistiques) d’un article.\r\n* Réaliser une étude transcriptomique avec R dans l’environnement RStudio.\r\n\r\nProgramme\r\n* Planification expérimentale des expériences RNA-Seq (identification des biais, répétitions, biais contrôlables).\r\n* Normalisation et analyse différentielle : recherche de “régions d’intérêt” différentiellement exprimées (modèle linéaire généralisé).\r\n*Prise en compte de la multiplicité des tests.\r\n\r\nLe cours sera illustré par différents exemples. 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