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            "accessConditions": "Open to South Green close collaborators",
            "maxParticipants": 20,
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                "https://catalogue.france-bioinformatique.fr/api/userprofile/174/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/771/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/772/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/773/?format=api"
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            ],
            "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png",
            "updated_at": "2023-12-04T15:32:33.606313Z",
            "type": "Training course",
            "start_date": "2022-06-14",
            "end_date": "2022-06-14",
            "venue": "",
            "city": "Montpellier",
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            "registration_closing": null,
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            "description": "This course offers an introduction to microbial genomics analysis.\r\nIt includes 5 issues: assembly, genome annotation, circos visualization, pan-genome construction, pan-GWAS.",
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            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
            "keywords": [
                "genomics",
                "Structural genomics",
                "Genome analysis"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "Open to South Green close collaborators",
            "maxParticipants": 10,
            "contacts": [
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            "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png",
            "updated_at": "2023-12-04T15:33:22.027184Z",
            "type": "Training course",
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            "end_date": "2023-06-09",
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            "registration_opening": null,
            "registration_closing": null,
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            "homepage": "https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annotation/#preliminary-schedule",
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            "costs": [
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            ],
            "topics": [
                "http://edamontology.org/topic_3697",
                "http://edamontology.org/topic_3941",
                "http://edamontology.org/topic_3174",
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            "organisedByTeams": [
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            "updated_at": "2024-02-19T10:09:50.076964Z",
            "type": "Workshop",
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            "end_date": "2024-03-15",
            "venue": "Online with a\r\n       • a Zoom room, open the whole week\r\n       • 2 daily stand-ups to accommodate different time zones\r\n       • Several brainstorming meetings\r\n       • microGalaxy Matrix chat for communication",
            "city": "",
            "country": "",
            "geographical_range": "International",
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            "computingFacilities": [],
            "realisation_status": "past",
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            "registration_closing": null,
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            "id": 652,
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                "R Language",
                "Gene expression differential analysis",
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            ],
            "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png",
            "updated_at": "2024-12-04T10:38:28.208166Z",
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            "end_date": "2025-09-26",
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            "type": "Training course",
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            "registration_closing": "2025-05-15",
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        },
        {
            "id": 533,
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            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [],
            "keywords": [
                "NGS Data Analysis",
                "Data visualization",
                "NGS"
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            "prerequisites": [
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            ],
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            "maxParticipants": 10,
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                    "id": 82,
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                }
            ],
            "organisedByTeams": [
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                    "id": 10,
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            ],
            "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png",
            "updated_at": "2023-05-26T14:16:02.157083Z",
            "type": "Training course",
            "start_date": "2023-06-15",
            "end_date": "2023-06-15",
            "venue": "Access to the INRAE center reception\r\n By car\r\n\r\n    Take the N118 from the Paris rotary Porte de Saint-Cloud > Pont de Sèvres > Follow direction Bordeaux/Nantes – take exit 6A Jouy-en-Josas/Bièvres\r\n    Take the N12 from Plaisir > Follow direction Paris exit 1 towards the D53\r\n    Take the A12 Rambouillet > Jouy – take exit 2 via the D446\r\n\r\n By the RER (train to the suburbs)\r\n\r\nRER C Line: Get off at the Jouy-en-Josas station. The research center is a 15 minute walk (you must walk towards the town hall (Mairie de Jouy).\r\n\r\n    From Chatelet-Les Halles, take the RER B line until the Massy-Palaiseau station (32 min.) then take the RER C line CIME train (14 min.)\r\n    From Versailles-Chantier RER C station take the VICK or VITY train (8 min.)\r\n    From the Bibliothèque François Mitterand RER C station, take the CIME train (1 hour)\r\n\r\n From the Orly Airport\r\n\r\nTake the bus « Paris par le train » to the Pont de Rungis RER C train station. Then take the RER C train CIME towards Versailles Chantiers. Get off at the Jouy-en-Josas station.\r\n\r\nStops of the “Paris par le train” bus :\r\n\r\n    Paris-Orly Sud : porte C, stop 6\r\n    Paris-Orly Ouest : porte G on the Arrivals level.\r\n\r\n From the Charles de Gaulle - Roissy Airport\r\n\r\nTo go from the Paris-Charles de Gaulle airport to Jouy-en-Josas you may take :\r\n\r\n    the RER B train towards St Remy les Chevreuses. Get off at the Massy Palaiseau station\r\n    the RER C train towards Versailles Chantiers (CIME trains). Get off at Jouy-en-Josas.",
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            "country": "",
            "geographical_range": "",
            "trainers": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/396/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api"
            ],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2023-05-25",
            "registration_closing": "2023-06-01",
            "registration_status": "closed",
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        },
        {
            "id": 537,
            "name": "New session of FAIR_bioinfo_@_AuBi",
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            "description": "Introduction aux bonnes pratiques en bio-informatique afin de pérenniser son travail de recherche.\r\n\r\nCette formation permet de découvrir les bonnes pratiques dans le cadre d’un travail nécessitant des approches programmatiques (statistiques, programmation d’outils, analyses de données biologiques). Elle s’inscrit aussi dans l’aspect science-ouverte afin de rendre plus facilement disponible et pérenne le travail bio-informatique. Après une introduction aux pratiques FAIR axées notamment sur les notions de reproductibilité et de répétabilité du code, plusieurs approches seront abordées: les bonnes pratiques de partage et gestion des versions des outils utilisés ; la gestion des environnements de travail (conda, docker, singularity) ; découverte du gestionnaire de workflow Snakemake : et enfin la documentation du code avec Rmarkdown et Jupyter.",
            "homepage": "https://mesocentre.uca.fr/actualites/pratiques-fair-en-bioinformatique-pour-des-analyses-reproductibles",
            "is_draft": false,
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            ],
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                "http://edamontology.org/topic_3307",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_3068"
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            "keywords": [
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                "Cloud",
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                "Snakemake",
                "Docker",
                "R"
            ],
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                "Linux - Basic Knowledge"
            ],
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                {
                    "id": 94,
                    "name": "Université Clermont Auvergne",
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            ],
            "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175",
            "updated_at": "2023-06-14T10:22:28.365980Z",
            "type": "Training course",
            "start_date": "2023-07-10",
            "end_date": "2023-07-17",
            "venue": "Turing Building\r\nRoom A09",
            "city": "Clermont-Ferrand",
            "country": "France",
            "geographical_range": "National",
            "trainers": [],
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            "computingFacilities": [],
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            "registration_opening": "2023-06-14",
            "registration_closing": "2023-06-30",
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        },
        {
            "id": 613,
            "name": "Les langages de workflows pour une analyse bioinformatique reproductible - session 2024 / Workflow languages for reproducible bioinformatics analysis -2024 session",
            "shortName": "WF4bioinfo 2024",
            "description": "L’Institut Français de Bioinformatique (IFB) organise en partenariat avec iPOP-UP (représenté par EDC) une formation sur les langages de workflows en bioinformatique à destination des bioinformaticien·ne·s et des bioanalystes. La formation abordera les fondamentaux et les fonctionnalités avancées des deux langages Snakemake et Nextflow. Ces outils sont en effet devenus indispensables pour assurer la reproductibilité et l’efficacité des analyses bioinformatiques. La formation sera structurée en deux séquences :\r\n- une journée commune qui abordera les grands principes des gestionnaires de workflow, en particulier dans le domaine de la bioinformatique et en lien avec les infrastructures de calcul de type cluster et cloud proposés au sein de l’IFB \r\n- une  journée de session pratique  avec 1 atelier snakemake et 1 atelier nextflow en parallèle au choix des participants. Nous proposons aux participants qui le souhaitent de travailler sur leur propre workflow dans une approche “Bring your own script” avec l’aide de l’équipe pédagogique.",
            "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=29",
            "is_draft": false,
            "costs": [],
            "topics": [
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_0091"
            ],
            "keywords": [
                "FAIR",
                "Reproducibility",
                "Nextflow",
                "Snakemake"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 20,
            "contacts": [
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                "https://catalogue.france-bioinformatique.fr/api/userprofile/326/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/804/?format=api"
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            ],
            "organisedByTeams": [
                {
                    "id": 38,
                    "name": "PB-IBENS",
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                }
            ],
            "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/1/core_admin/logocompact/300x300/1654772049/IFB-HAUT-COULEUR-PETIT.png",
            "updated_at": "2024-03-28T10:04:12.722566Z",
            "type": "Training course",
            "start_date": "2024-10-14",
            "end_date": "2024-10-16",
            "venue": "",
            "city": "Paris",
            "country": "France",
            "geographical_range": "National",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2024-03-01",
            "registration_closing": "2024-06-30",
            "registration_status": "closed",
            "courseMode": "Onsite"
        },
        {
            "id": 502,
            "name": "FAIR_bioinfo_@_AuBi",
            "shortName": "FAIR_bioinfo",
            "description": "Introduction aux bonnes pratiques en bio-informatique afin de pérenniser son travail de recherche.\r\n\r\nCette formation permet de découvrir les bonnes pratiques dans le cadre d’un travail nécessitant des approches programmatiques (statistiques, programmation d’outils, analyses de données biologiques). Elle s’inscrit aussi dans l’aspect science-ouverte afin de rendre plus facilement disponible le travail bio-informatique. Après une introduction aux pratiques FAIR axées notamment sur les notions de reproductibilité et de répétabilité du code, plusieurs points seront abordés: les bonnes pratiques de partage et gestion des versions des outils utilisés ; la gestion des environnements de travail (conda, docker, singularity) ; découverte du gestionnaire de workflow Snakemake : et enfin la documentation du code avec Rmarkdown et Jupyter.",
            "homepage": "https://mesocentre.uca.fr/actualites/formation-2022-pratiques-fair-en-bioinformatique",
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            ],
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            "end_date": "2022-12-02",
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            "name": "Formation Principes FAIR dans un projet de bioinformatique - Session 1 - Strasbourg",
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                "Docker"
            ],
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                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "Academics",
            "maxParticipants": 14,
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            ],
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            "id": 709,
            "name": "New session of FAIR_bioinfo_@_AuBi",
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            "homepage": "https://mesocentre.uca.fr/actualites/pratiques-fair-en-bioinformatique-pour-des-analyses-reproductibles",
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            "costs": [
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            ],
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                "http://edamontology.org/topic_3307",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_3068"
            ],
            "keywords": [
                "Methodology",
                "Programming Languages & Computer Sciences",
                "Cloud",
                "Linux",
                "Snakemake",
                "Docker",
                "R"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "Having an account on Mesocentre Clermont Auvergne Infrastructure",
            "maxParticipants": 16,
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                {
                    "id": 101,
                    "name": "iGReD",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/iGReD/?format=api"
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                    "name": "AuBi",
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            ],
            "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175",
            "updated_at": "2025-02-17T13:11:26.183643Z",
            "type": "Training course",
            "start_date": "2025-05-19",
            "end_date": "2025-02-21",
            "venue": "",
            "city": "Aubière",
            "country": "France",
            "geographical_range": "",
            "trainers": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/522/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/525/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/807/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/818/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/819/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/820/?format=api"
            ],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2025-02-17",
            "registration_closing": "2025-05-12",
            "registration_status": "open",
            "courseMode": "Onsite"
        },
        {
            "id": 558,
            "name": "Introduction to Microbial Comparative Genomics 2023",
            "shortName": "",
            "description": "This course offers an introduction to microbial genomics analysis.\r\nIt includes 5 issues: assembly, genome annotation, circos visualization, pan-genome construction, pan-GWAS.",
            "homepage": "https://southgreenplatform.github.io/trainings//bacterialGenomics/",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
            "keywords": [
                "genomics",
                "Structural genomics",
                "Genome analysis"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "Open to South Green close collaborators",
            "maxParticipants": 10,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/174/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/771/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/772/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/773/?format=api"
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                    "id": 24,
                    "name": "South Green",
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            ],
            "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png",
            "updated_at": "2023-12-04T15:33:22.027184Z",
            "type": "Training course",
            "start_date": "2023-06-08",
            "end_date": "2023-06-09",
            "venue": "",
            "city": "Montpellier",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
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            "registration_opening": null,
            "registration_closing": null,
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            "name": "Annotation and analysis of prokaryotic genomes using the MicroScope platform - March 2023",
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            "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.",
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                "http://edamontology.org/topic_3301"
            ],
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                "Genome analysis",
                "Structural and functional annotation of genomes"
            ],
            "prerequisites": [
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            "openTo": "Everyone",
            "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/",
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            "updated_at": "2023-05-17T09:53:07.876054Z",
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            "end_date": "2023-03-24",
            "venue": "",
            "city": "Evry",
            "country": "France",
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