Event List
Handles creating, reading and updating events.
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La formation abordera les différents points fondamentaux (théoriques, pratiques, juridiques) en lien avec la politique nationale d’ouverture des données de la recherche et présentera sous forme de séances pratiques les ressources nationales accessibles à la communauté scientifique ainsi que les solutions proposées par l’IFB pour gérer les données d’un projet de recherche.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=8&username=guest", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3420", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_3571" ], "keywords": [ "Données" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "public", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://www.france-bioinformatique.fr/wp-content/uploads/logo-ifb-couleur.svg", "updated_at": "2023-10-16T08:30:29.394936Z", "type": "Training course", "start_date": "2022-03-22", "end_date": "2022-03-23", "venue": "", "city": "Paris", "country": "France", "geographical_range": "Local", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 561, "name": "Introduction to Microbial Comparative Genomics 2022", "shortName": "", "description": "This course offers an introduction to microbial genomics analysis.\r\nIt includes 5 issues: assembly, genome annotation, circos visualization, pan-genome construction, pan-GWAS.", "homepage": "https://southgreenplatform.github.io/trainings//bacterialGenomics/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [ "genomics", "Structural genomics", "Genome analysis" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Internal personnel", "accessConditions": "Open to South Green close collaborators", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/174/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/771/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/772/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/773/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T15:32:33.606313Z", "type": "Training course", "start_date": "2022-06-14", "end_date": "2022-06-14", "venue": "", "city": "Montpellier", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 404, "name": "Formation IFB Science Ouverte & PGD - Comment gérer des jeux de données haut-débit en sciences de la vie et de la santé - Session 2", "shortName": "FAIR data - Session 2", "description": "L’Institut Français de Bioinformatique (IFB) organise une formation à destination de bioinformaticiens, biologistes et médecins. La formation abordera les différents points fondamentaux (théoriques, pratiques, juridiques) en lien avec la politique nationale d’ouverture des données de la recherche et présentera sous forme de séances pratiques les ressources nationales accessibles à la communauté scientifique ainsi que les solutions proposées par l’IFB pour gérer les données d’un projet de recherche.", "homepage": "https://www.france-bioinformatique.fr/formation/fair-data-science-ouverte-et-pgd-session-2/", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3420", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_3571" ], "keywords": [ "Données" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "public", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": null, "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2021-11-15", "end_date": "2021-11-18", "venue": "Online zoom session", "city": "", "country": "France", "geographical_range": "National", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/162/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/655/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/198/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2021-09-27", "registration_closing": "2021-10-27", "registration_status": "closed", "courseMode": "Online" }, { "id": 472, "name": "Workflow4metabolomics - 2021 session postponed to 2022, march", "shortName": "W4E 2021", "description": "Processing, statistical analysis, and annotation of metabolomics data is a complex task for experimenters since it involves many steps and requires a good knowledge of both the methodology and software tools. The Workflow4Metabolomics.org (W4M) online infrastructure provides a user-friendly and high-performance environment with advanced computational modules for building, running, and sharing complete workflows for LC-MS, GC-MS, FIA and NMR analysis. Such features are of major values for teaching computational metabolomics to experimenters, and previous courses using W4M since 2014 have been very successful.", "homepage": "https://workflow4metabolomics.org/w4e2021", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": null, "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2022-03-21", "end_date": "2022-03-25", "venue": "", "city": "Toulouse", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 627, "name": "Principes FAIR pour la gestion des données - Session 2024 IBISA-IFB Lyon", "shortName": "FAIR data IBISA Lyon 2024", "description": "Cette session de formation a pour but de former des responsables et membres de plateformes IBISA aux principes FAIR de gestion des données .\r\nLa formation se déroule sur 2 jours avec une alternance de présentation générales, et techniques, témoignages et ateliers pratiques pour travailler sur différents sujets : PGD de structure, métadonnées, sécurité des données,...etc.\r\nA la fin de cette formation auront \r\n- acquis des connaissances théoriques et pratiques sur la gestion selon les principes FAIR de leurs données dans le contexte de la Science Ouverte\r\n- identifié des pistes d'amélioration pour la gestion des données de leur plateforme.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=30", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3420", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_3571" ], "keywords": [ "Données" ], "prerequisites": [ "Biologists" ], "openTo": "Internal personnel", "accessConditions": "private for IBISA platform staff", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/162/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/1/core_admin/logocompact/300x300/1654772049/IFB-HAUT-COULEUR-PETIT.png", "updated_at": "2024-04-24T09:40:20.523534Z", "type": "Training course", "start_date": "2024-06-11", "end_date": "2024-07-03", "venue": "", "city": "Lyon", "country": "", "geographical_range": "Local", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-04-24", "registration_closing": null, "registration_status": "open", "courseMode": "Blended" }, { "id": 613, "name": "Les langages de workflows pour une analyse bioinformatique reproductible - session 2024 / Workflow languages for reproducible bioinformatics analysis -2024 session", "shortName": "WF4bioinfo 2024", "description": "L’Institut Français de Bioinformatique (IFB) organise en partenariat avec iPOP-UP (représenté par EDC) une formation sur les langages de workflows en bioinformatique à destination des bioinformaticien·ne·s et des bioanalystes. La formation abordera les fondamentaux et les fonctionnalités avancées des deux langages Snakemake et Nextflow. Ces outils sont en effet devenus indispensables pour assurer la reproductibilité et l’efficacité des analyses bioinformatiques. La formation sera structurée en deux séquences :\r\n- une journée commune qui abordera les grands principes des gestionnaires de workflow, en particulier dans le domaine de la bioinformatique et en lien avec les infrastructures de calcul de type cluster et cloud proposés au sein de l’IFB \r\n- une journée de session pratique avec 1 atelier snakemake et 1 atelier nextflow en parallèle au choix des participants. Nous proposons aux participants qui le souhaitent de travailler sur leur propre workflow dans une approche “Bring your own script” avec l’aide de l’équipe pédagogique.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=29", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_0091", "http://edamontology.org/topic_0769" ], "keywords": [ "FAIR", "Reproducibility", "Nextflow", "Snakemake" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/326/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/804/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [ { "id": 38, "name": "PB-IBENS", "url": "https://catalogue.france-bioinformatique.fr/api/team/PB-IBENS/?format=api" } ], "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/1/core_admin/logocompact/300x300/1654772049/IFB-HAUT-COULEUR-PETIT.png", "updated_at": "2024-03-28T10:04:12.722566Z", "type": "Training course", "start_date": "2024-10-14", "end_date": "2024-10-16", "venue": "", "city": "Paris", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-01", "registration_closing": "2024-06-30", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 602, "name": "Environments and best practices for using the BiRD cluster", "shortName": "Best practices BiRD cluster", "description": "Objectives\r\n- Understand and implement the principles of reproducible science in analysis and development projects\r\n- Acquire basic commands necessary for optimal use of the cluster\r\n\r\nPedagogical Content\r\n- Introduction to reproducibility\r\n- Best practices on code history and sharing: Git\r\n- Conda environment\r\n- Presentation of the computing cluster\r\n- Introduction to workflows using Snakemake", "homepage": "https://pf-bird.univ-nantes.fr/training/cluster/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "Have an account on the BiRD cluster.", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg", "updated_at": "2024-02-19T09:37:24.789207Z", "type": "Training course", "start_date": "2024-03-19", "end_date": "2024-03-19", "venue": "", "city": "Nantes", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-02-08", "registration_closing": "2024-03-18", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 664, "name": "Les langages de workflows pour une analyse bioinformatique reproductible / Workflow languages for reproducible bioinformatics analysis", "shortName": "WF4bioinfo", "description": "L’Institut Français de Bioinformatique (IFB) organise en partenariat avec iPOP-UP (représenté par EDC) une formation sur les langages de workflows en bioinformatique à destination des bioinformaticien·ne·s et des bioanalystes. La formation abordera les fondamentaux et les fonctionnalités avancées des deux langages Snakemake et Nextflow. Ces outils sont en effet devenus indispensables pour assurer la reproductibilité et l’efficacité des analyses bioinformatiques. La formation sera structurée en deux séquences :\r\n- une journée commune qui abordera les grands principes des gestionnaires de workflow, en particulier dans le domaine de la bioinformatique et en lien avec les infrastructures de calcul de type cluster et cloud proposés au sein de l’IFB \r\n- une journée de session pratique avec 1 atelier snakemake et 1 atelier nextflow en parallèle au choix des participants. Nous proposons aux participants qui le souhaitent de travailler sur leur propre workflow dans une approche “Bring your own script” avec l’aide de l’équipe pédagogique.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=36", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_0091", "http://edamontology.org/topic_0769" ], "keywords": [ "FAIR", "Reproducibility", "Nextflow", "Snakemake" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/326/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/804/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [ { "id": 38, "name": "PB-IBENS", "url": "https://catalogue.france-bioinformatique.fr/api/team/PB-IBENS/?format=api" } ], "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/1/core_admin/logocompact/300x300/1654772049/IFB-HAUT-COULEUR-PETIT.png", "updated_at": "2025-09-23T09:21:52.846631Z", "type": "Training course", "start_date": "2025-09-29", "end_date": "2025-10-01", "venue": "", "city": "Paris", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 641, "name": "Environments and best practices for using the BiRD cluster", "shortName": "Best practices BiRD cluster", "description": "Objectives\r\n- Understand and implement the principles of reproducible science in analysis and development projects\r\n- Acquire basic commands necessary for optimal use of the cluster\r\n\r\nPedagogical Content\r\n- Introduction to reproducibility\r\n- Best practices on code history and sharing: Git\r\n- Conda environment\r\n- Presentation of the computing cluster\r\n- Introduction to workflows using Snakemake", "homepage": "https://pf-bird.univ-nantes.fr/training/cluster/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "Have an account on the BiRD cluster.", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg", "updated_at": "2024-08-22T15:52:25.757146Z", "type": "Training course", "start_date": "2024-10-01", "end_date": "2024-10-01", "venue": "", "city": "Nantes", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 414, "name": "Diplôme Universitaire en Bioinformatique Intégrative - session 2021 / University Diploma in Integrative Bioinformatics - 2021 session", "shortName": "DUBii 2021", "description": "La bioinformatique est devenue une compétence incontournable pour l'analyse de données de nature diverse : génomes, transcriptomes, protéomes, métabolomes, structures macromoléculaires, réseaux d'interactions. L'appropriation par les biologistes des méthodes et outils de biostatistique et bioinformatique intégrative est un enjeu majeur pour la montée en compétence des équipes de recherche et des plateformes de service.\r\n\r\nL'université Paris Diderot propose en partenariat avec l'Institut Français de Bioinformatique (IFB) la deuxième édition du Diplôme Universitaire en Bioinformatique intégrative (DU-Bii). Cette formation s’adresse en priorité à des biologistes en demande d'évolution ou de reconversion professionnelle ayant déjà acquis des compétences (formation courte, autoapprentissage, expérience de terrain) en informatique ou bioinformatique/biostatistique (environnement Unix, Python ou R ou autre langage de programmation). Les prérequis sont décrits sur le portail “DU” de l’université Paris Diderot, qui présente le DU-Bii et le DU complémentaire \"Création, Analyse et Valorisation de données omiques\" (DUO).\r\n\r\nLe DU-Bii fournira une formation théorique et pratique, complétée par une période d'immersion sur l'une des plateformes régionales de l'IFB, qui mobilisera, dans le cadre d'un projet tutoré, l'ensemble des méthodes et outils appris durant les cours pour réaliser un projet personnel de bioinformatique intégrative. Ce projet combinera des données propres à chaque participant produites dans son laboratoire (principe BYOD : “Bring Your Own Data”) ou collectées à partir de bases de données publiques.\r\n\r\nRenseignements et candidatures : fcsdv@univ-paris-diderot.fr\r\nInscriptions : voir la page page du DU-Bii de l'Université Paris Diderot\r\nContacts Paris-Diderot : Bertrand.Cosson@univ-paris-diderot.fr \r\nContacts IFB : Helene.Chiapello@inra.fr, Jacques.van-Helden@univ-amu.fr", "homepage": "https://www.france-bioinformatique.fr/dubii/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 28, "name": "University Paris-Cité", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Cit%C3%A9/?format=api" }, { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [], "logo_url": null, "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2021-03-01", "end_date": "2021-06-16", "venue": "", "city": "Paris", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 713, "name": "Linux Avancé / Advanced Linux", "shortName": "Advanced Linux", "description": "Objectifs\r\n- Savoir utiliser des commandes linux pour traiter de grosses quantités de données : fichiers\r\nvolumineux et/ou en grands nombres : recherche, comptage, tri, fusion, …\r\nProgramme\r\n- Introduction\r\n- Décrire (wc, grep)\r\n- Manipuler des fichiers tabulés (cut, sort)\r\n- Rechercher (grep)\r\n- Redirection / Pipeline (stdin, stdout, stderr, >, 2>, &&, |)\r\n- Recherche avancée : notion d’expression régulière (egrep)\r\n- Rechercher/Remplacer haut débit (tr, sed)\r\n- Manipulation de fichier tabulé – mode avancé (awk)\r\n- Traitement séquentiel de nombreux fichiers (for)", "homepage": "https://abims.sb-roscoff.fr/ateliers/2025", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "Preregistration required using: https://abims.sb-roscoff.fr/ateliers/preinscription", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2025-02-21T08:52:39.134624Z", "type": "Training course", "start_date": "2025-05-15", "end_date": "2025-05-15", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2025-02-09", "registration_closing": "2025-04-30", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 458, "name": "Initiation à Git / Git Initiation - 2021 Session 2", "shortName": "Git Initiation - 2021 S2", "description": "Objectifs\r\n- Savoir définir ce qu’est un outil de gestion de version\r\n- Être capable d’initialiser un entrepôt Git pour un projet\r\n- Être capable de définir quels fichiers inclure/exclure d’un projet\r\n- Savoir enregistrer localement une nouvelle version pour un projet\r\n- Savoir partager des modifications locales avec tous les contributeurs d’un projet\r\n- Savoir gérer des modifications en parallèle en utilisant les branches.\r\n- Connaître les bonnes pratiques pour contribuer à projet tiers\r\nProgramme :\r\n- Présentation des avantages de la gestion de versions (projets individuels & projets collaboratifs)\r\n- Présentation des principes de fonctionnement de Git\r\n- Présentation et mise en œuvre des commandes principales de Git (clone, checkout, add, rm, commit, merge,\r\npush, pull) ; en ligne de commande ou en utilisant une interface graphique (GitHub et GitLab)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3372" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/299/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2022-10-07T08:23:00.426374Z", "type": "Training course", "start_date": "2022-01-21", "end_date": null, "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2021-12-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 619, "name": "Manipulating & Visualizing Data with R - 2024", "shortName": "R - DataViz - 2024", "description": "Objectifs\r\n- Importer, structurer, transformer et exporter un tableau de données avec R\r\n- Générer des figures de qualité pour, par exemple, une publication scientifique\r\n\r\nProgramme\r\n- Introduction au tidyverse (metapackage pour manipuler, visualiser et analyser des données)\r\n- Import et export de tableaux de données (csv, excel, google sheet, etc.)\r\n- Manipulation de tableaux de données avec dplyr et tidyr (filtre, aggregation, jointure)\r\n- Manipulation de chaînes de caractères et de dates avec stringr et lubridate\r\n- Introduction aux concepts de visualisation de données\r\n- Apprendre à utiliser ggplot2 grâce à esquisse\r\n- Partager ses résultats avec Quarto", "homepage": "http://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0092" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/299/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2025-01-23T13:52:27.424558Z", "type": "Training course", "start_date": "2024-05-23", "end_date": "2024-05-23", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-29", "registration_closing": "2024-04-21", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 481, "name": "Statistiques avec R / Statistics with R - 2022 Session 1", "shortName": "R - Stats - 2022 S1", "description": "Objectifs\r\n- Choisir un test statistique adapté à un problème donné.\r\n-\r\nImporter des données et réaliser un test avec R.\r\nProgramme\r\n- Théorie : modèle, loi de distribution, hypothèse H0, variable de test, p-value, tests multiples, FDR\r\n- Pratique : réalisation de tests sous R dans un environnement convivial (RStudio)\r\n-\r\ntests usuels simples : Gauss, Student, χ2\r\n-\r\ntests multiples : ANOVA, correction (ex. Student multiple), tests spécifiques (ex. SAM)", "homepage": "http://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_2269" ], "keywords": [], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/299/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2022-05-03", "end_date": null, "venue": "https://www.sb-roscoff.fr/fr/station-biologique-de-roscoff/services/venir-a-la-sbr", "city": "Roscoff", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-03-09", "registration_closing": "2022-04-10", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 620, "name": "Galaxy / Galaxy Initiation - 2024", "shortName": "Galaxy Initiation - 2024", "description": "Objectifs\r\n- Savoir exploiter l’environnement Galaxy pour être en mesure d’analyser ses données.\r\n- Être en mesure de créer ses workflows.\r\nProgramme\r\n- Téléchargement des données à traiter.\r\n- Manipulation de fichiers.\r\n- Traitement des données.\r\n- Visualisation des résultats.\r\n- Création de workflows.\r\n- Partage de résultats et de workflows.", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0769" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/299/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2025-01-23T13:52:11.506916Z", "type": "Training course", "start_date": "2024-05-27", "end_date": "2024-05-27", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-29", "registration_closing": "2024-04-21", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 500, "name": "Initiation à Galaxy / Galaxy Initiation - 2022 Session 2", "shortName": "Galaxy Initiation - 2022 Session 2", "description": "Objectifs\r\n- Savoir exploiter l’environnement Galaxy pour être en mesure d’analyser ses données.\r\n- Être en mesure de créer ses workflows.\r\nProgramme\r\n- Téléchargement des données à traiter.\r\n- Manipulation de fichiers.\r\n- Traitement des données.\r\n- Visualisation des résultats.\r\n- Création de workflows.\r\n- Partage de résultats et de workflows.", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0769" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:54:49.847679Z", "type": "Training course", "start_date": "2022-11-24", "end_date": "2022-11-24", "venue": "Station Biologique de Roscoff", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-10-07", "registration_closing": "2022-11-06", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 624, "name": "Linux Avancé / Advanced Linux - 2024", "shortName": "Advanced Linux - 2024", "description": "Objectifs\r\n- Savoir utiliser des commandes linux pour traiter de grosses quantités de données : fichiers\r\nvolumineux et/ou en grands nombres : recherche, comptage, tri, fusion, …\r\nProgramme\r\n- Introduction\r\n- Décrire (wc, grep)\r\n- Manipuler des fichiers tabulés (cut, sort)\r\n- Rechercher (grep)\r\n- Redirection / Pipeline (stdin, stdout, stderr, >, 2>, &&, |)\r\n- Recherche avancée : notion d’expression régulière (egrep)\r\n- Rechercher/Remplacer haut débit (tr, sed)\r\n- Manipulation de fichier tabulé – mode avancé (awk)\r\n- Traitement séquentiel de nombreux fichiers (for)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2025-01-23T13:51:43.807358Z", "type": "Training course", "start_date": "2024-05-29", "end_date": "2024-05-29", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-29", "registration_closing": "2024-04-21", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 498, "name": "Utilisation du cluster - SLURM / Cluster usage - SLURM - 2022 Session 2", "shortName": "Cluster SLURM - 2022 Session 2", "description": "Objectifs\r\n- Disposer des concepts et de bonnes pratiques d’utilisation des ressources de calcul.\r\n- Être capable d’utiliser les ressources de calcul de la plateforme en toute autonomie.\r\nProgramme\r\n- Introduction : les équipements (calcul et stockage), espaces de travail, les outils et les données.\r\n- Calcul parallèle : concepts, ressources\r\n- Soumission de jobs (srun, sbatch)\r\n- Monitorer, vérifier, controler les jobs (squeue, scontrol, scancel, sacct).\r\n- Base de l’optimisation d’un job\r\n- Solutions de parallélisation des jobs : (--array)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:55:11.578705Z", "type": "Training course", "start_date": "2022-11-23", "end_date": "2022-11-23", "venue": "Station Biologique de Roscoff", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-10-07", "registration_closing": "2022-11-06", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 522, "name": "Utilisation du cluster - SLURM / Cluster usage - SLURM - Session 1 - 2023", "shortName": "Cluster SLURM 2023 S1", "description": "Objectifs\r\n- Disposer des concepts et de bonnes pratiques d’utilisation des ressources de calcul.\r\n- Être capable d’utiliser les ressources de calcul de la plateforme en toute autonomie.\r\nProgramme\r\n- Introduction : les équipements (calcul et stockage), espaces de travail, les outils et les données.\r\n- Calcul parallèle : concepts, ressources\r\n- Soumission de jobs (srun, sbatch)\r\n- Monitorer, vérifier, controler les jobs (squeue, scontrol, scancel, sacct).\r\n- Base de l’optimisation d’un job\r\n- Solutions de parallélisation des jobs : (--array)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:26:47.718424Z", "type": "Training course", "start_date": "2023-06-22", "end_date": "2023-06-22", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-02-22", "registration_closing": "2023-05-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 497, "name": "Linux Avancé / Advanced Linux - 2022 Session2", "shortName": "Advanced Linux - 2022 Session 2", "description": "Objectifs\r\n- Savoir utiliser des commandes linux pour traiter de grosses quantités de données : fichiers\r\nvolumineux et/ou en grands nombres : recherche, comptage, tri, fusion, …\r\nProgramme\r\n- Introduction\r\n- Décrire (wc, grep)\r\n- Manipuler des fichiers tabulés (cut, sort)\r\n- Rechercher (grep)\r\n- Redirection / Pipeline (stdin, stdout, stderr, >, 2>, &&, |)\r\n- Recherche avancée : notion d’expression régulière (egrep)\r\n- Rechercher/Remplacer haut débit (tr, sed)\r\n- Manipulation de fichier tabulé – mode avancé (awk)\r\n- Traitement séquentiel de nombreux fichiers (for)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:55:24.793130Z", "type": "Training course", "start_date": "2022-11-22", "end_date": "2022-11-22", "venue": "Station Biologique de Roscoff", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-10-07", "registration_closing": "2022-11-06", "registration_status": "closed", "courseMode": "Onsite" } ] }
