Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=440&ordering=type
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This workshop is tailored for data scientists, advanced Galaxy users, and team leaders who need to scale, automate, and publish their data analysis workflows for batch processing and production-level applications.\r\n\r\nOver five days, you’ll embark on a comprehensive journey through Galaxy’s advanced capabilities:\r\n\r\nMonday: Introduction & Workflow Development\r\n\r\nStart with a welcome and icebreaker to foster collaboration, followed by a brief overview of Galaxy and its workflow features. Dive into hands-on workflow development, where you’ll learn to design clean, efficient workflows, customize them with parameters, and generate user-friendly workflow reports—combining theory with practical application.\r\n\r\nTuesday: Workflow FAIRification, Documentation, and Export\r\n\r\nBegin with a recap of Day 1, then explore UseGalaxy.fr and its unique features. Learn to annotate workflows with metadata, apply best practices for FAIR compliance, and implement tests to ensure reliability. Publish your workflows to WorkflowHub and Dockstore via the IWC. Develop high-resolution workflow visualizations and create interactive tutorials using a “Choose Your Own Tutorial” approach. Finally, master workflow export by creating RO-Crates for reproducibility and submitting workflows to LifeMonitor for performance tracking.\r\n\r\nWednesday: Scaling Workflows & Galaxy Using Command-Line and API\r\n\r\nStart with a recap and real-world examples of large-scale Galaxy projects. Learn to execute workflows from the command line using Planemo, automate batch processing with shell scripts, and analyze performance for efficiency. Discover how to scale Galaxy use with BioBlend, designing Python scripts for batch workflow execution and evaluating scalability. The day concludes with an introduction to the “Bring Your Own Work” session.\r\n\r\nThursday: Bring Your Own Work (BYOW)\r\n\r\nDedicate the day to applying your new skills to your own projects. With guidance from trainers, refine your workflows, troubleshoot challenges, and implement solutions using your personal data. Collaborate with peers, document your progress, and optimize your workflows to leave with actionable results for your research.\r\n\r\nFriday: Storage, Data Management, Recap, and Closing\r\n\r\nThe final half-day begins with a recap of the week’s progress, followed by a session on “Bring Your Own Storage”, exploring how to integrate personal or institutional storage with Galaxy. Learn about managing databases in Galaxy and the IDC (Intergalactic Data Commission) effort for efficient data organization. The workshop concludes with a general recap, supplementary exercises, and feedback and closing remarks, ensuring you leave with a comprehensive understanding and resources for continued success.\r\n\r\nThis training will be conducted in French, while the materials (slides) will be in English.\r\n\r\nRequirements\r\n\r\nPrior knowledge and experience using Galaxy\r\nPrior knowledge and experience using command line\r\nFluent in French (materials will be in English and discussions will happen in French)\r\nYour own computer\r\nOptional but encouraged: your own workflow and dataset for the Bring Your Own Work (BYOW) session. The workflow and the dataset must be shareable and non-sensitive (i.e., they must not contain any patient-related information or confidential data). The dataset size must be small.", "homepage": "https://training.galaxyproject.org/training-material/events/2026-10-12-Advanced-Galaxy-Training.html#overview", "is_draft": false, "costs": [ "700 euros HT" ], "topics": [ "http://edamontology.org/topic_3316", "http://edamontology.org/topic_0769", "http://edamontology.org/topic_0091" ], "keywords": [ "Reproducibility", "Galaxy", "Workflow development" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "NA", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/810/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://training.galaxyproject.org/training-material/assets/images/GTN.png", "updated_at": "2026-04-23T08:29:43.871506Z", "type": "Training course", "start_date": "2026-10-12", "end_date": "2026-10-16", "venue": "", "city": "Paris", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2026-04-22", "registration_closing": "2026-06-05", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 374, "name": "Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-12-17", "end_date": "2017-12-21", "venue": "", "city": "Institut Pasteur", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 388, "name": "RNASeq analyses (using Galaxy and TOGGLe)", "shortName": "", "description": "This course offers an introduction to RNASeq analyses using two different workflow management systems: Galaxy and TOGGLe. This includes reference-based mapping, estimates of transcript levels, differential expression (DE) analyses, visualization of statistics results.\nPrerequisites\nWorkflow management system (Galaxy, TOGGLe)\n\nProgram\nMapping of RNASeq against a transcriptome reference with kallisto (Galaxy)\nMapping of RNASeq against an annotated genome reference with TopHat (TOGGLe)\nDifferential expression analysis using EdgeR and DESeq2\nPlots, clustering, co-expression network: degust, WGCNA\n\n\nLearning objectives\nManipulate packages/tools available for searching DE genes\nThink about different normalisation methods\nDetect differentially expressed genes\nCompare results between two approaches\n\n\nInstructors\nAlexis Dereeper - alexis.dereeper@ird.fr\nSebastien Cunnac - sebastien.cunnac@ird.fr\nSebastien Ravel - sebastien.ravel@cirad.fr\nChristine Tranchant - christine.tranchant@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//rnaseq/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-15", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 418, "name": "Formation IFB Science Ouverte & PGD - Comment gérer des jeux de données haut-débit en sciences de la vie et de la santé - Session 1", "shortName": "FAIR data - Session 1", "description": "L’Institut Français de Bioinformatique (IFB) organise une formation à destination de bioinformaticiens, biologistes et médecins. La formation abordera les différents points fondamentaux (théoriques, pratiques, juridiques) en lien avec la politique nationale d’ouverture des données de la recherche et présentera sous forme de séances pratiques les ressources nationales accessibles à la communauté scientifique ainsi que les solutions proposées par l’IFB pour gérer les données d’un projet de recherche.", "homepage": "https://ifb-elixirfr.github.io/IFB-FAIR-data-training/", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3571", "http://edamontology.org/topic_3420", "http://edamontology.org/topic_0219" ], "keywords": [ "Données" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "public", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://www.france-bioinformatique.fr/wp-content/uploads/logo-ifb-couleur.svg", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2021-03-15", "end_date": "2021-03-19", "venue": "", "city": "", "country": "", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/162/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/655/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/198/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 394, "name": "Bioinformatics of protein--protein interactions for wet lab scientists", "shortName": "", "description": "Understanding physical and functional interactions between molecules in living systems is crucial in many biological processes. Several powerful methods and techniques have been developed to generate molecular interaction data, focusing mainly on protein-protein interactions (PPIs). In particular, PPIs involving partially or completely unstructured regions are building blocks of regulatory and signalling networks that control cell response to external and internal cues. Exploring these interactions may help understanding a protein’s function and behavior, predicting biological processes that a protein of unknown function is involved in, and characterising protein complexes that can be used to modulate or perturb known biological processes and pathways.\n", "homepage": "https://c3bi.pasteur.fr/training-bioinformatics-of-protein%C2%ADprotein-interact…", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 12, "name": "INCEPTION", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/INCEPTION/?format=api" } ], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-04-02", "end_date": "2017-04-06", "venue": "", "city": "Institut Pasteur", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 272, "name": "Training on annotation of transposable elements", "shortName": "", "description": "The objectives of this training are: \nTo acquire knowledge on transposable elements\nTo achieve annotation of transposable elements in the genome using REPET pipelines\nTo be autonomous on your own data.\nProgram\nOpening presentations on transposable elements and their annotation\nStrategies of repeat annotation\nREPET pipelines overview and practices \nPost-analyze tools overview and practices\n \n", "homepage": "https://urgi.versailles.inra.fr/Platform/Training/Training-on-annotation-of-tran…", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "Bioinformatics and Plant Genomics", "Sequence analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "This training is dedicated to biologists and/or bioinformaticians (10 pers. max)\nCost : 150€\nRegistration and information by mail to: urgi-contact@inra.fr\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-06-10", "end_date": "2018-06-12", "venue": "", "city": "INRA-URGI, Centre de Versailles", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 271, "name": "Intégration d'outils dans Galaxy", "shortName": "", "description": "Galaxy (https://galaxyproject.org/) est une plateforme permettant d’intégrer et d’exécuter via une interface graphique des outils bioinformatiques, normalement utilisables en ligne de commande. Galaxy permet ainsi de faciliter l’utilisation de ces outils par tous, dans un environnement contrôlé,mais aussi de favoriser la reproductibilité des analyses (workflows, …).\nActuellement, > 3 750 outils (disponibles sur https://toolshed.g2.bx.psu.edu/) peuvent être intégrés à Galaxy. Mais tous les outils bioinformatiques dont vous pouvez avoir besoin ne sont pas intégrés dans \nl’environnement Galaxy. Et vous devez ainsi parfois renoncer à utiliser Galaxy et ses avantages pour traiter vos données.\n\nUn workshop est organisé à Clermont-Ferrand le Mercredi 25 Mai 2016. \nN’hésitez pas à faire circuler cette information aux personnes potentiellement intéressées.\nMerci par avance.\nBérénice BATUT\n\n", "homepage": "https://brnice.typeform.com/to/vCq4AV", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Galaxy" ], "prerequisites": [ "Autre (Diplôme universitaire, école d'ingénieur ...)" ], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2016-05-24", "end_date": null, "venue": "", "city": "Clermont-Ferrand - Université d'Auvergne", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": 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null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 284, "name": "Unix", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-03-05", "end_date": null, "venue": "", "city": "Salle de formation Inra", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 342, "name": "Analyse bioinformatique de données RNA-Seq sous Galaxy", 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