Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=420&ordering=-registration_closing
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[], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 138, "name": "Linux Initiation", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-11-27", "end_date": null, "venue": "", "city": "Roscoff", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 34, "name": "Initiation à Python", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-03-07", "end_date": "2017-03-08", "venue": "", "city": "Jouy en Josas", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 205, "name": "ELIXIR Software Carpentry Workshop 2019", "shortName": "", "description": "Teaching basic lab skill for Research Computing", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/logo-ijm-header.jpg", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2019-04-15", "end_date": "2019-04-16", "venue": "", "city": "INSTITUT JACQUES MONOD - Université Paris Diderot/CNRS ", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 67, "name": "Perl avancé", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-05-10", "end_date": null, "venue": "", "city": "Jouy en Josas", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 194, "name": "WAVES Training 2018", "shortName": "", "description": "We organize a workshop to train users to WAVES, a Web Application for Versatile Enhanced Bioinformatic Services", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/241/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 48, "name": "Institut Pasteur", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Institut%20Pasteur/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/default_images/logo_ge_2.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-12-18", "end_date": null, "venue": "Institut Pasteur (Paris)", "city": "Paris", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 653, "name": "Analyses Single Cell RNA-seq (ScRNA-seq) avec R", "shortName": "", "description": "Cette formation introduira notamment la librairie Seurat permettant la manipulation et l'analyse de données Single Cell RNA-seq ainsi que la visualisation des résultats d'analyse\r\n\r\n- Rappels des concepts du séquençage Single Cell RNA-seq\r\n- Importation des données Single Cell dans R\r\n- Intégration de données Single Cell multiples\r\n- Quality Check et pré-traitement des données\r\n- Normalisation de données\r\n- Identification de marqueurs\r\n- Clustering et assignation cellulaire\r\n- Analyse différentielle des groupes cellulaires\r\n- Savoir intégrer les données de spatialisation\r\n- Savoir intégrer les données de trajectoire\r\n- Savoir intégrer les données de communication cellulaire\r\n- Savoir intégrer les données d'épigénétique (ATAC-seq)", "homepage": "https://cnrsformation.cnrs.fr/analyses-single-cell-rna-seq-scrna-seq-avec-r?axe=176", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Bioinformatics & Biomedical", "R Language", "R", "NGS Sequencing Data Analysis" ], "prerequisites": [ "Basic knowledge of R", "R programming" ], "openTo": "Everyone", "accessConditions": "Maîtrise du langage R\r\nAvoir suivi le stage \"Langage R : introduction\" ou niveau équivalent.\r\nAfin de vérifier que votre maîtrise du langage R est suffisante pour pouvoir suivre ce stage, nous vous invitons à effectuer et à renvoyer le test téléchargeable\r\nhttps://cnrsformation.cnrs.fr/data/STG_23294_55153.docx", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/154/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 6, "name": "CNRS formation entreprise", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20formation%20entreprise/?format=api" } ], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 6, "name": "CBiB", "url": "https://catalogue.france-bioinformatique.fr/api/team/CBiB/?format=api" } ], "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png", "updated_at": "2024-12-04T10:38:37.927125Z", "type": "Training course", "start_date": "2025-11-04", "end_date": "2025-11-05", "venue": "", "city": "Bordeaux", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2024-12-03", "registration_closing": "2025-10-31", "registration_status": "open", "courseMode": "Onsite" }, { "id": 659, "name": "Annotation and analysis of prokaryotic genomes using the MicroScope platform - November 2025", "shortName": "MicroScope training - November 2025", "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.", "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0797", "http://edamontology.org/topic_0085", "http://edamontology.org/topic_3301" ], "keywords": [], "prerequisites": [ "Licence" ], "openTo": "Everyone", "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/90/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 15, "name": "Laboratory of Bioinformatics Analyses for Genomics and Metabolism", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Laboratory%20of%20Bioinformatics%20Analyses%20for%20Genomics%20and%20Metabolism/?format=api" } ], "organisedByOrganisations": [ { "id": 71, "name": "UEVE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/UEVE/?format=api" } ], "organisedByTeams": [ { "id": 9, "name": "MicroScope", "url": "https://catalogue.france-bioinformatique.fr/api/team/MicroScope/?format=api" } ], "logo_url": "https://labgem.genoscope.cns.fr/wp-content/uploads/2021/06/GENOSCOPE-LABGeM.jpg", "updated_at": "2025-01-23T13:31:56.736534Z", "type": "Training course", "start_date": "2025-11-24", "end_date": "2025-11-28", "venue": "", "city": "Evry", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": null, "registration_closing": "2025-10-26", "registration_status": "open", "courseMode": "Onsite" }, { "id": 703, "name": "Python scripts for bioinformatics and Linux - Session 2025", "shortName": "Scripts en Python pour la bioinformatique et environnement Linux", "description": "OBJECTIFS\r\n- Connaître les principes et les avantages du système Linux\r\n- Connaître et savoir utiliser les commandes de base permettant de lancer des programmes sous Linux\r\n- Comprendre et savoir lancer des scripts\r\n- Être capable d'écrire des scripts en Python\r\n- Acquérir de l'autonomie pour effectuer des analyses bioinformatiques qui combinent plusieurs outils \r\n\r\nPRÉREQUIS\r\n- Notions de base en informatique : fichiers, répertoires, etc. \r\n\r\nPROGRAMME\r\n- Linux : lignes de commandes, principales commandes, redirection\r\n- Lancer, créer et modifier des scripts\r\n- Notions de variables, de boucles, de choix\r\n- Programmation de scripts : utilisation de paramètres et de variables, combinaison d'outils et de logiciels, écriture des résultats dans un ou plusieurs fichiers\r\n- Création d'un pipeline d'outils", "homepage": "https://cnrsformation.cnrs.fr/linux-et-script-pour-bioinformatique", "is_draft": false, "costs": [ "1200 €" ], "topics": [], "keywords": [ "Linux", "Python Language" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/528/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": null, "updated_at": "2025-02-11T08:50:54.103356Z", "type": "Training course", "start_date": "2025-11-04", "end_date": "2025-11-07", "venue": "", "city": "Montpellier", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2025-02-01", "registration_closing": "2025-10-20", "registration_status": "open", "courseMode": "Onsite" }, { "id": 651, "name": "Langage R : introduction", "shortName": "", "description": "Cette formation introduira le langage R et les techniques de fouille et de visualisation de données.\r\n\r\n- Installation et configuration de R\r\n- Notions et commandes essentielles (variables, fonctions...)\r\n- Les formats de fichiers, la lecture et l'écriture de données tabulées\r\n- Les outils de manipulation et de transformation de grands tableaux\r\n- Les constructions modernes pour la création de graphiques", "homepage": "https://cnrsformation.cnrs.fr/langage-r-introduction?axe=176", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "R Language" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/154/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 6, "name": "CNRS formation entreprise", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20formation%20entreprise/?format=api" } ], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 6, "name": "CBiB", "url": "https://catalogue.france-bioinformatique.fr/api/team/CBiB/?format=api" } ], "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png", "updated_at": "2024-12-04T10:37:48.502726Z", "type": "Training course", "start_date": "2025-09-22", "end_date": "2025-09-24", "venue": "", "city": "Bordeaux", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2024-12-03", "registration_closing": "2025-09-19", "registration_status": "open", "courseMode": "Onsite" }, { "id": 652, "name": "Analyses NGS avec R", "shortName": "", "description": "Cette formation introduira les paquetages Bioconductor permettant l'analyse de données issues du séquençage nouvelle génération.\r\n\r\n- Rappels des concepts du séquençage NGS\r\n- Les outils d'annotation et de conversion d'identifiants\r\n- L'analyse des reads et du résultat d'alignement\r\n- L'analyse d'expression différentielle en RNA-seq\r\n- Les techniques d'enrichissement\r\n- Les outils de visualisation pour les NGS\r\n\r\nLa fin du stage (2 h) sera consacrée à un atelier pédagogique d'analyse et de réflexion sur les données apportées par les stagiaires.", "homepage": "https://cnrsformation.cnrs.fr/analyses-ngs-r?axe=176", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "NGS Data Analysis", "R Language", "Gene expression differential analysis", "Data visualization" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/154/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 6, "name": "CNRS formation entreprise", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20formation%20entreprise/?format=api" } ], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 6, "name": "CBiB", "url": "https://catalogue.france-bioinformatique.fr/api/team/CBiB/?format=api" } ], "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png", "updated_at": "2024-12-04T10:38:28.208166Z", "type": "Training course", "start_date": "2025-09-25", "end_date": "2025-09-26", "venue": "", "city": "Bordeaux", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2024-12-03", "registration_closing": "2025-09-19", "registration_status": "open", "courseMode": "Onsite" }, { "id": 535, "name": "Analyse de données de métabarcoding : 2025", "shortName": "Analyse de données de métabarcoding", "description": "Cette formation est dédiée à l'analyse de données de type \"metabarcoding\" issues de la technologie de séquençage Illumina. Nous aborderons les différentes étapes bioinformatiques nécessaires pour transformer les données de séquençage brutes en table d'abondances. Nous présenterons également les outils et méthodologies classiquement utilisés pour décrire la diversité observée et comparer les échantillons.\r\nA l’issue des 4 jours de formation, les stagiaires connaîtront le périmètre, les avantages et limites des analyses de données de séquençage amplicons (métabarcoding).\r\nIls seront capables d’utiliser les outils de FROGS sur les jeux de données de la formation (16S et ITS).\r\nIls seront capables d’identifier les outils et méthodes adaptées au cadre de leurs analyses.\r\nS’ils ont en leur possession un jeu de données à analyser, ils sont encouragés à venir avec celui- ci.", "homepage": "https://migale.inrae.fr/trainings/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2025-01-23T15:50:14.223205Z", "type": "Training course", "start_date": "2025-06-23", "end_date": "2025-06-26", "venue": "Access to the INRAE center reception\r\n By car\r\n\r\n Take the N118 from the Paris rotary Porte de Saint-Cloud > Pont de Sèvres > Follow direction Bordeaux/Nantes – take exit 6A Jouy-en-Josas/Bièvres\r\n Take the N12 from Plaisir > Follow direction Paris exit 1 towards the D53\r\n Take the A12 Rambouillet > Jouy – take exit 2 via the D446\r\n\r\n By the RER (train to the suburbs)\r\n\r\nRER C Line: Get off at the Jouy-en-Josas station. The research center is a 15 minute walk (you must walk towards the town hall (Mairie de Jouy).\r\n\r\n From Chatelet-Les Halles, take the RER B line until the Massy-Palaiseau station (32 min.) then take the RER C line CIME train (14 min.)\r\n From Versailles-Chantier RER C station take the VICK or VITY train (8 min.)\r\n From the Bibliothèque François Mitterand RER C station, take the CIME train (1 hour)", "city": "Jouy-en-Josas", "country": "frnce", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/473/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/743/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/415/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2025-01-22", "registration_closing": "2025-06-08", "registration_status": "open", "courseMode": "Onsite" }, { "id": 717, "name": "EBAII - Ecole de Bioinformatique niveau débutant 2025", "shortName": "EBAII N1 2025", "description": "Description : La formation EBAII IFB, INSERM et INRAe de niveau 1 propose une expérience d'apprentissage intensive conçue pour les biologistes, qu'ils soient ingénieurs, doctorants, chercheurs, enseignants-chercheurs ou praticiens, qui sont confrontés à l'analyse de données NGS (Next-Generation Sequencing) mais qui ne disposent pas encore des compétences bioinformatiques nécessaires, ou qui cherchent à renforcer leurs compétences existantes.\r\n\r\nContenu : Cette formation est structurée autour d'une combinaison de sessions théoriques et d'ateliers pratiques. Les participants auront l'occasion d'explorer diverses thématiques, notamment le traitement de données de variants, ChIP-Seq, Bulk RNA-Seq, et Single-Cell RNA-Seq. De plus, ils recevront une introduction aux technologies \"long reads\".\r\n\r\nObjectifs généraux:\r\nAcquérir une compréhension approfondie des concepts liés à l'analyse de données NGS.\r\nMaîtriser les outils informatiques nécessaires pour effectuer ces analyses.\r\nInterpréter les résultats des analyses de données NGS.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=37", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "Biostatistics", "Sequence analysis", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). \r\nAucune connaissance préalable des environnements Linux ou R n’est requise, mais il sera demandé aux participants de suivre une autoformation en ligne en amont, pour faciliter la prise en main de ces langages. La formation approfondira progressivement l’usage de ces environnements au fil des sessions thématiques.", "maxParticipants": 40, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" }, { "id": 13, "name": "Aviesan", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Aviesan/?format=api" }, { "id": 14, "name": "Inserm", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Inserm/?format=api" } ], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" }, { "id": 53, "name": "AVIESAN", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AVIESAN/?format=api" } ], "organisedByTeams": [ { "id": 14, "name": "BiGEst", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiGEst/?format=api" }, { "id": 29, "name": "IFB 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Sequencing Data Analysis" ], "prerequisites": [ "Basic knowledge of R", "R programming" ], "openTo": "Everyone", "accessConditions": "Maîtrise du langage R\r\nAvoir suivi le stage \"Langage R : introduction\" ou niveau équivalent.\r\nAfin de vérifier que votre maîtrise du langage R est suffisante pour pouvoir suivre ce stage, nous vous invitons à effectuer et à renvoyer le test téléchargeable\r\nhttps://cnrsformation.cnrs.fr/data/STG_23294_55153.docx", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/154/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 6, "name": "CNRS formation entreprise", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20formation%20entreprise/?format=api" } ], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 6, "name": "CBiB", "url": "https://catalogue.france-bioinformatique.fr/api/team/CBiB/?format=api" } ], "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png", "updated_at": "2024-12-04T10:38:18.342890Z", "type": "Training course", "start_date": "2025-06-03", "end_date": "2025-06-04", "venue": "", "city": "Bordeaux", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2024-12-03", "registration_closing": "2025-06-03", "registration_status": "open", "courseMode": "Onsite" }, { "id": 700, "name": "Manipulation de données avec R, introduction à tidyverse : 2025", "shortName": "Introduction à tidyverse", "description": "Objectifs pédagogiques\r\nA l’issue de la formation, les stagiaires seront capables de :\r\n* utiliser les principales fonctions des packages dplyr et tidyr de l’écosystème du « tidyverse »\r\n* lire les données et les ranger dans un format « tidy »\r\n* manipuler les données : filtrer, sélectionner, trier, produire des résultats par groupe, fusionner plusieurs tables\r\n* mettre en forme et pivoter les tables de données\r\n\r\nProgramme\r\n* Principes du tidyverse\r\n* Principales fonctions de manipulation de données du package dplyr : ajouter de nouvelles variables, sélectionner des colonnes, filtrer des lignes, trier, grouper, fusionner des tables\r\n* Enchaînements des opérations à l’aide de « pipe »\r\n* Mise en forme, jointure et pivot de données avec le package tidyr\r\n* Mise en application sur un exemple d’analyse de données de transcriptomique.", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "R Language", "Tidyverse" ], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2025-01-23T15:46:16.560558Z", "type": "Training course", "start_date": "2025-06-16", "end_date": "2025-06-17", "venue": "", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2025-01-21", "registration_closing": "2025-06-01", "registration_status": "open", "courseMode": "Online" }, { "id": 699, "name": "Modélisation in silico de structures 3D de protéines. 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Ils seront capables de les appliquer pour visualiser leur système biologique d’intérêt, et d’effectuer des commandes basiques d’identification de poches catalytiques, de profilage de surface électrostatique, et de mutations d’acides aminés.\r\n\r\nAussi, ils connaîtront les bases et les outils de bioinformatique structurale et seront autonomes pour effectuer des modèles de protéines par prédiction (Alphafold2), calculer les meilleures poses de fixation de leur(s) ligand(s) (Autodock4) et reconstruire l’éventuel assemblage biologique.\r\n\r\nBonus : Ils s’approprieront ces outils avec une demi-journée dédiée à la modélisation de leur système d’étude : protéines, interactions protéines/ADN, arrimage de ligand, etc.\r\n\r\nProgramme\r\nVisualiser :\r\n* Maîtriser les bases de la visualisation des protéines en 3D avec PyMOL.\r\nComprendre :\r\n* Analyser des structures 3D de protéines (RX ou RMN).\r\n* Identifier des homologues avec HHpred.\r\n* Modéliser par prédiction sa protéine d’intérêt avec Alphafold2.\r\nPrédire :\r\n* Savoir calculer des meilleures poses de ligands avec Autodock.\r\n* Prédir et modéliser les mutations in silico.\r\n\r\n- Points forts et limites des différents outils\r\n- ️“hand- on tutorials”\r\n- Plus une session dédiée : «bring your own protein»", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_1317" ], "keywords": [ "Protein structures", "2D/3D", "Protein/protein interaction modelisation" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2025-01-23T15:44:32.386212Z", "type": "Training course", "start_date": "2025-06-04", "end_date": "2025-06-05", "venue": "", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2025-01-21", "registration_closing": "2025-05-20", "registration_status": "open", "courseMode": "Online" }, { "id": 649, "name": "Analyses NGS avec R", "shortName": "", "description": "Cette formation introduira les paquetages Bioconductor permettant l'analyse de données issues du séquençage nouvelle génération.\r\n\r\n- Rappels des concepts du séquençage NGS\r\n- Les outils d'annotation et de conversion d'identifiants\r\n- L'analyse des reads et du résultat d'alignement\r\n- L'analyse d'expression différentielle en RNA-seq\r\n- Les techniques d'enrichissement\r\n- Les outils de visualisation pour les NGS\r\n\r\nLa fin du stage (2 h) sera consacrée à un atelier pédagogique d'analyse et de réflexion sur les données apportées par les stagiaires.", "homepage": "https://cnrsformation.cnrs.fr/analyses-ngs-r?axe=176", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "NGS Data Analysis", "R Language", "Gene expression differential analysis", "Data visualization" ], "prerequisites": [ "Linux - 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