Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=40&ordering=-id
{ "count": 671, "next": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=60&ordering=-id", "previous": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=20&ordering=-id", "results": [ { "id": 748, "name": "Best practices for using the BiRD cluster", "shortName": "Best practices in bioinformatics", "description": "Objectives\r\n- Understand and implement the principles of reproducible science in analysis and development projects\r\n- Acquire basic commands necessary for optimal use of the cluster\r\n\r\nPedagogical Content\r\n- Introduction to reproducibility\r\n- Best practices on code history and sharing: Git\r\n- Conda environment\r\n- Presentation of the computing cluster\r\n- Introduction to workflows using Snakemake", "homepage": "https://pf-bird.univ-nantes.fr/training/cluster/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "Have an account on the BiRD cluster.", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg", "updated_at": "2026-01-27T10:36:05.128514Z", "type": "Training course", "start_date": "2025-10-21", "end_date": "2025-10-21", "venue": "", "city": "Nantes", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2025-10-18", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 747, "name": "Introduction to Linux", "shortName": "Introduction to Linux - BiRD", "description": "Objectives\r\n- Understand the principles and advantages of the Linux system\r\n- Know and use the main bash commands. Ability to chain multiple commands using pipes\r\n- Launch programs with arguments\r\n- Gain independence to perform command line analyses\r\n\r\nPedagogical Content\r\n- Introduction to the Linux system.\r\n- File system: directory structure, paths, home directory, file and directory management.\r\n- Principle of protections: reading file attributes, access rights, management of user groups.\r\n- Shell usage: command reminders, input/output redirection, history, completion, launching programs with arguments.\r\n- Commands relevant to bioinformatics: grep, cut, sed, sort, more, etc.\r\n- Connection (ssh) - how to start a session from Linux or Windows PowerShell", "homepage": "https://pf-bird.univ-nantes.fr/training/linux/", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg", "updated_at": "2026-03-31T08:47:45.957937Z", "type": "Training course", "start_date": "2025-10-20", "end_date": "2025-10-20", "venue": "Faculté de Pharmacie - Salle 450, 4ème étage", "city": "Nantes", "country": "", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2025-10-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 746, "name": "RNASeq Analysis", "shortName": "RNASeq Analysis", "description": "Objectives\r\n- Understand the key steps in RNASeq data analysis for a differential expression study\r\n- Know how to perform command-line analysis using Snakemake.\r\n\r\nPedagogical Content\r\nDay 1\r\n- Principle of RNASeq technology: objectives and experimental design.\r\n- Data quality assessment (FastQC, MultiQC).\r\n- Sequence alignment to a reference genome (STAR).\r\n\r\nDay 2\r\n- Differential gene expression analysis (HTSeqCount, DESeq2).\r\n- Functional annotation (GO, Kegg).\r\n- Using the Snakemake workflow system.\r\n- Comparison between RNASeq and 3’SRP methods.\r\n\r\nThe theoretical part is followed by a pipeline run step-by-step on a test dataset. \r\nIt will be possible to start an analysis on your own data.", "homepage": "https://pf-bird.univ-nantes.fr/training/rnaseq/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "Familiarity with basic Linux commands.", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg", "updated_at": "2026-01-27T10:34:29.823975Z", "type": "Training course", "start_date": "2025-11-03", "end_date": "2025-11-04", "venue": "", "city": "Nantes", "country": "", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2025-10-29", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 745, "name": "Annotation and analysis of prokaryotic genomes using the MicroScope platform", "shortName": "MicroScope training - April 2026", "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.", "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0085", "http://edamontology.org/topic_3301", "http://edamontology.org/topic_0797" ], "keywords": [], "prerequisites": [ "Licence" ], "openTo": "Everyone", "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/90/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 15, "name": "Laboratory of Bioinformatics Analyses for Genomics and Metabolism", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Laboratory%20of%20Bioinformatics%20Analyses%20for%20Genomics%20and%20Metabolism/?format=api" } ], "organisedByOrganisations": [ { "id": 71, "name": "University of Évry Val d'Essonne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20of%20%C3%89vry%20Val%20d'Essonne/?format=api" } ], "organisedByTeams": [ { "id": 9, "name": "MicroScope", "url": "https://catalogue.france-bioinformatique.fr/api/team/MicroScope/?format=api" } ], "logo_url": "https://labgem.genoscope.cns.fr/wp-content/uploads/2019/06/MicroScope_logo-300x210.png", "updated_at": "2026-01-22T13:20:26.879727Z", "type": "Training course", "start_date": "2026-03-30", "end_date": "2026-04-03", "venue": "", "city": "Evry", "country": "", "geographical_range": "International", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2026-02-27", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 744, "name": "Langage R : introduction", "shortName": "", "description": "Cette formation introduira le langage R et les techniques de fouille et de visualisation de données.\r\n\r\n- Installation et configuration de R\r\n- Notions et commandes essentielles (variables, fonctions...)\r\n- Les formats de fichiers, la lecture et l'écriture de données tabulées\r\n- Les outils de manipulation et de transformation de grands tableaux\r\n- Les constructions modernes pour la création de graphiques", "homepage": "https://cnrsformation.cnrs.fr/catalogue/formation/43/langage-r-introduction/", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_0605" ], "keywords": [ "R Language" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/154/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 6, "name": "CNRS formation entreprise", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20formation%20entreprise/?format=api" } ], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 6, "name": "CBiB", "url": "https://catalogue.france-bioinformatique.fr/api/team/CBiB/?format=api" } ], "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png", "updated_at": "2025-12-09T09:59:07.812841Z", "type": "Training course", "start_date": "2026-06-01", "end_date": "2026-06-03", "venue": "", "city": "Bordeaux", "country": "France", "geographical_range": "National", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/34/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/154/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": "2025-12-03", "registration_closing": "2026-05-20", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 741, "name": "Initiation à Galaxy - session Juin 2025", "shortName": "", "description": "Bilille organise régulièrement des formations d'initiation à l'outil Galaxy d'une journée, destinée aux biologistes et médecins désirant découvrir le traitement bioinformatique de données via une interface conviviale.\r\n\r\nGalaxy est très répandu pour l’analyse de données omiques, telles que données de séquençage ou données de puces à ADN. \r\nC'est l'environnement qui est utilisé lors du cycle de formation “Analyse de données de séquençage à haut-débit”.", "homepage": "https://bilille.univ-lille.fr/training/training-offer", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [ "Galaxy" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "Ouvert en priorité aux participants du cycle Analyse NGS organisé par Bilille.", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/763/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/487/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 3, "name": "Bilille", "url": "https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=api" } ], "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png", "updated_at": "2025-11-21T16:39:58.895195Z", "type": "Training course", "start_date": "2025-06-23", "end_date": "2025-06-23", "venue": "", "city": "Villeneuve d'Ascq", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 740, "name": "ETBII 2026 Ecole Thématique de Bioinformatique Intégrative / Integrative Bioinformatics Training School", "shortName": "ETBII 2026", "description": "La bioinformatique intégrative : principes et mise en œuvre sur un jeu de données multi-omiques.\r\n\r\nPrésentation de la formation\r\nLa bioinformatique intégrative est une thématique scientifique pluridisciplinaire récente qui combine et analyse des données biologiques provenant de différentes sources dans le but d’obtenir une compréhension holistique des systèmes biologiques. \r\nL’Institut Français de Bioinformatique (IFB) organise une école thématique à destination des bioinformaticiens/biostatisticiens/bioanalystes souhaitant acquérir des compétences théoriques et pratiques en bioinformatique intégrative.\r\nCette école rassemble une équipe pédagogique de 10 personnes et pourra accueillir 30 participants maximum pour sa nouvelle édition.\r\nLes sessions pratiques de l’école thématique s’appuieront sur des jeux de données fournis par les formateurs, spécialement sélectionnés pour illustrer les concepts abordés et permettre une mise en application concrète des méthodes présentées.\r\nPar ailleurs, des temps de travail en sous-groupes permettront à celles et ceux qui le souhaitent d’analyser leurs propres données(Bring Your Own Data BYOD), sous réserve que ces données soient partageables au sein des participants, adaptées aux approches présentées durant la formation et non sensibles (par exemple, ne contenant pas d’informations liées à des patients ou des données confidentielles).\r\nCe mode de fonctionnement permettra d’adapter les exercices aux contextes scientifiques réels des participants et de favoriser les échanges autour de cas pratiques variés.\r\nL’ensemble de la formation reposera sur l’utilisation des ressources de calcul et environnements de travail de l’Institut Français de Bioinformatique (https://www.france-bioinformatique.fr/calcul-et-stockage/).\r\nLes participants sont donc invités à respecter les conditions d’utilisation du Cluster IFB, notamment celles concernant le traitement de données dites sensibles ou de santé humaine, détaillées à l’adresse suivante : https://doc.cluster.france-bioinformatique.fr/terms-of-usage/#cas-des-donnees-dites-sensibles-ou-de-sante-humaine. Cette démarche garantit un cadre de travail conforme aux bonnes pratiques en matière de gestion et de partage des données scientifiques.\r\n\r\nPublic visé\r\nCette formation est ouverte à tous les scientifiques (doctorant·e·s, ingénieur·e·s, chercheur·e·s) impliqués dans un ou plusieurs projets de bioinformatique intégrative mobilisant des jeux de données omiques de natures différentes.\r\n\r\nPré-requis\r\n- Connaissances de base en Unix/shell, R\r\n- Autonomie dans la gestion et l’administration de son poste de travail (installation de librairies et utilisation des environnements de packaging type conda)\r\n- Une expérience préalable en analyse de données, idéalement appliquée à un jeu de données omiques, est attendue.\r\n\r\nObjectifs pédagogiques\r\nLa formation a pour objectif :\r\n- d’introduire les concepts de bases et les différents types d’approches utilisées en bioinformatique intégrative\r\n- de proposer un approfondissement et une mise en pratique de ces approches sur un/des jeux de données intégrant différents types de données omiques\r\n- de faire bénéficier aux participants de l’expertise de l'équipe pédagogique sur la mise en œuvre des méthodes intégratives présentées durant la formation sur des jeux de données proposés par les participants.\r\nA la fin de cette formation les participants :\r\n- auront acquis un socle de connaissances générales en bioinformatique intégrative \r\n- auront identifié et appliqué sur un exemple les méthodes les plus utilisées en bioinformatique intégrative (méthodes de réduction de dimension, approches Réseaux, web sémantique) et auront mis en œuvre une analyse intégrative sur un/des jeux de données proposés lors de la - formation.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=45", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_3391", "http://edamontology.org/topic_3366", "http://edamontology.org/topic_0091" ], "keywords": [ "Methodology", "Biostatistics", "Biological network inference and analysis", "Dimension reduction", "Semantic web", "Integration of heterogeneous data", "Data Integration", "Tool integration" ], "prerequisites": [ "Linux and knowledge of NGS formats", "Basic knowledge of R", "Python - basic knowledge" ], "openTo": "Everyone", "accessConditions": "Cette formation est ouverte à tous les scientifiques (doctorant·e·s, ingénieur·e·s, chercheur·e·s) impliqués dans un ou plusieurs projets de bioinformatique intégrative mobilisant des jeux de données omiques de natures différentes.", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/1441/course/overviewfiles/Copie%20de%20Logo_ETBII_Couleurs%20%281%29.png", "updated_at": "2025-11-03T14:11:43.902530Z", "type": "Training course", "start_date": "2026-03-29", "end_date": "2026-04-04", "venue": "", "city": "Fréjus", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2025-11-02", "registration_closing": "2025-12-17", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 738, "name": "Soumission de données et métadonnées à BioSample et ENA - 2025", "shortName": "FAIR Data EBI 2025", "description": "Nous vous proposons une formation en ligne sur le processus et les outils mis en place dans le cadre des projets AgroDiv et BReIF pour soumettre des données à ENA (EMBL-EBI) associées à des descriptions riches des échantillons séquencés dans BioSamples. Le webinaire abordera une explication approfondie des fichiers d'entrée requis pour la soumission, des champs demandés dans les template ainsi qu'une démonstration de l'utilisation des scripts développés pour automatiser la soumission des données et simplifier le processus.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=44", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3366", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_0625", "http://edamontology.org/topic_0091", "http://edamontology.org/topic_0780" ], "keywords": [ "Données" ], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "Ce webinaire est ouvert à tous : n’hésitez pas à disséminer l’information dans vos unités.\r\nLes participants doivent s’inscrire ici : https://sondages.inrae.fr/index.php/768122?lang=fr", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/813/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 22, "name": "BReIF", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/BReIF/?format=api" } ], "organisedByOrganisations": [ { "id": 39, "name": "URGI - 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