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            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands  (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.",
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            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": "Online"
        },
        {
            "id": 642,
            "name": "A Hackathon for microbial data analysis workflow FAIRification",
            "shortName": "",
            "description": "The primary goal of this hackathon is to prepare, integrate, and FAIRify microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), ensuring they adhere to best practices for accessibility, interoperability, and reusability across the bioinformatics community. IWC acts as a central hub for Galaxy workflows, automatically listing them in major registries like Dockstore and WorkflowHub, while ensuring workflows are rigorously reviewed, tested, and updated with every new Galaxy release. Versioning, tool updates, and essential metadata enhance the findability and usability of each workflow.\r\n\r\nIn short, the objectives of this hackathon are to:\r\n- Annotate and apply best practices to microbial data analysis Galaxy workflows for consistency and reusability\r\n- Implement robust tests to ensure workflow reliability and accuracy\r\n- Successfully integrate key microbial data analysis Galaxy workflows into IWC, improving accessibility and usability\r\n- Collaborate as a community to refine and improve workflows, ensuring they are peer-reviewed and meet high standards\r\n- Make these peer-reviewed workflows accessible to the broader community through the future microGalaxy Lab\r\n\r\nThis hackathon is open to participants from all communities, so join us to help shape the future of bioinformatics workflows! Experts and IWC experienced users will be participating in the hackathon to support and explain the requirements during the event.",
            "homepage": "https://galaxyproject.org/events/2024-11-21-hackathon-microgalaxy-iwc/",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [
                "http://edamontology.org/topic_3697",
                "http://edamontology.org/topic_3941",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_0121"
            ],
            "keywords": [
                "Galaxy",
                "Workflow development"
            ],
            "prerequisites": [],
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            "accessConditions": "",
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            "elixirPlatforms": [],
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                    "name": "CNRS - IFB",
                    "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api"
                }
            ],
            "organisedByOrganisations": [
                {
                    "id": 4,
                    "name": "IFB",
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                },
                {
                    "id": 87,
                    "name": "AuBi",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api"
                }
            ],
            "organisedByTeams": [
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                    "id": 29,
                    "name": "IFB Core",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api"
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                    "id": 31,
                    "name": "AuBi",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api"
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            ],
            "logo_url": null,
            "updated_at": "2024-11-22T09:55:01.514886Z",
            "type": "Workshop",
            "start_date": "2024-11-21",
            "end_date": "2024-11-21",
            "venue": "Online with a\r\n       • a Zoom room, open the whole week\r\n       • 2 stand-ups to accommodate different time zones\r\n       • Several brainstorming meetings\r\n       • microGalaxy Matrix chat for communication",
            "city": "",
            "country": "",
            "geographical_range": "International",
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            "registration_opening": "2024-10-10",
            "registration_closing": null,
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        },
        {
            "id": 577,
            "name": "Annotation and analysis of prokaryotic genomes using the MicroScope platform - November 2024",
            "shortName": "MicroScope training - November 2024",
            "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.",
            "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [
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                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_3301"
            ],
            "keywords": [
                "Sequence analysis",
                "Microbial evolution",
                "Structural and functional annotation of genomes",
                "Sequence annotation"
            ],
            "prerequisites": [
                "Licence"
            ],
            "openTo": "Everyone",
            "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/",
            "maxParticipants": 12,
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                {
                    "id": 15,
                    "name": "Laboratory of Bioinformatics Analyses for Genomics and Metabolism",
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                }
            ],
            "organisedByOrganisations": [
                {
                    "id": 71,
                    "name": "UEVE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/UEVE/?format=api"
                }
            ],
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                    "id": 9,
                    "name": "MicroScope",
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            "logo_url": "https://labgem.genoscope.cns.fr/wp-content/uploads/2021/06/GENOSCOPE-LABGeM.jpg",
            "updated_at": "2024-02-01T14:22:25.240457Z",
            "type": "Training course",
            "start_date": "2024-11-18",
            "end_date": "2024-11-22",
            "venue": "",
            "city": "Evry",
            "country": "France",
            "geographical_range": "",
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            "registration_closing": "2024-10-18",
            "registration_status": "closed",
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        },
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            "id": 628,
            "name": "EBAII - Ecole de Bioinformatique  \"Initiation au traitement des données de génomique obtenues par séquençage à haut débit\" session 2024",
            "shortName": "EBAII niv1 - 2024 session",
            "description": "Description : La formation EBAII IFB Aviesan de niveau 1 propose une expérience d'apprentissage intensive conçue pour les biologistes, qu'ils soient ingénieurs, doctorants, chercheurs, enseignants-chercheurs ou praticiens, qui sont confrontés à l'analyse de données NGS (Next-Generation Sequencing) mais qui ne disposent pas encore des compétences bioinformatiques nécessaires, ou qui cherchent à renforcer leurs compétences existantes.\r\n\r\nContenu : Cette formation est structurée autour d'une combinaison de sessions théoriques et d'ateliers pratiques. Les participants auront l'occasion d'explorer diverses thématiques, notamment le traitement de données de variants, ChIP-Seq, Bulk RNA-Seq, et Single-Cell RNA-Seq. De plus, ils recevront une introduction aux technologies \"long reads\".\r\n\r\nObjectifs généraux:\r\nAcquérir une compréhension approfondie des concepts liés à l'analyse de données NGS.\r\nMaîtriser les outils informatiques nécessaires pour effectuer ces analyses.\r\nInterpréter les résultats des analyses de données NGS.",
            "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=28",
            "is_draft": false,
            "costs": [
                "Priced"
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            "keywords": [
                "Biostatistics",
                "Sequence analysis",
                "NGS Sequencing Data Analysis"
            ],
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            "openTo": "Everyone",
            "accessConditions": "La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). \r\nAucune connaissance préalable des environnements Linux ou R n’est requise, mais il sera demandé aux participants de suivre une autoformation en ligne en amont, pour faciliter la prise en main de ces langages. La formation approfondira progressivement l’usage de ces environnements au fil des sessions thématiques.",
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            "contacts": [],
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                    "id": 3,
                    "name": "IFB",
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                },
                {
                    "id": 14,
                    "name": "Inserm",
                    "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Inserm/?format=api"
                }
            ],
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                    "name": "IFB",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api"
                },
                {
                    "id": 56,
                    "name": "INSERM",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api"
                }
            ],
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                    "id": 14,
                    "name": "BiGEst",
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                },
                {
                    "id": 29,
                    "name": "IFB Core",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api"
                },
                {
                    "id": 10,
                    "name": "MIGALE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api"
                },
                {
                    "id": 11,
                    "name": "Pasteur HUB",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/Pasteur%20HUB/?format=api"
                },
                {
                    "id": 4,
                    "name": "ABiMS",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api"
                },
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                    "id": 22,
                    "name": "Genotoul-bioinfo",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api"
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            ],
            "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/1023/course/section/179/logoEBAII.jpg",
            "updated_at": "2024-12-05T09:13:51.889568Z",
            "type": "Training course",
            "start_date": "2024-11-17",
            "end_date": "2024-11-22",
            "venue": "",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "National",
            "trainers": [],
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            "realisation_status": "past",
            "registration_opening": "2024-04-13",
            "registration_closing": "2024-06-14",
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        },
        {
            "id": 636,
            "name": "How To Run a NF-Core Nextflow Workflow On Genotoul ? - session 12/11/2024",
            "shortName": "Nextflow/nf-core - session 12/11/2024",
            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning nf-core workflow submission, error understanding, resuming jobs and ressource reservation. We will present and practice:\r\n\r\nthe Nextflow software\r\nthe nf-core community and pipelines\r\nWhat is a singularity image ?\r\nWhere are installed the nf-core workflows ? Which version do I use ?\r\nHow to run a workflow and which config file is used ?\r\nWhich kind of error I can get ?\r\nHow to resume failed jobs?\r\nHow to handle genome indexes ?\r\nHow to monitor my process and then well configure my workflow ?\r\nHow do you best adjust CPU and RAM reservations?\r\nThis is NOT a bioinformatic training on a particular workflow or a training on how to develop a workflow.\r\n\r\nThis training is focused on practice. It consists of several modules with a large variety of exercises:\r\n\r\nStart at 09:00 am\r\nEnd at 17:00 pm",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/how-to-run-a-nf-core-nextflow-workflow-on-genotoul-2/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
                "http://edamontology.org/topic_0769"
            ],
            "keywords": [
                "Nextflow"
            ],
            "prerequisites": [
                "Linux/Unix",
                "Cluster"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 12,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api"
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                    "id": 15,
                    "name": "MIAT",
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                }
            ],
            "organisedByTeams": [
                {
                    "id": 22,
                    "name": "Genotoul-bioinfo",
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                }
            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2024-06-10T12:38:11.016801Z",
            "type": "Training course",
            "start_date": "2024-11-12",
            "end_date": "2024-11-12",
            "venue": "",
            "city": "castanet-tolosan",
            "country": "France",
            "geographical_range": "",
            "trainers": [
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                "https://catalogue.france-bioinformatique.fr/api/userprofile/470/?format=api"
            ],
            "trainingMaterials": [
                {
                    "id": 143,
                    "name": "workflows nf-core",
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                }
            ],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2024-06-05",
            "registration_closing": "2024-11-06",
            "registration_status": "closed",
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        },
        {
            "id": 606,
            "name": "5th workshop Single-Cell : Transcriptomics, Spatial and Long reads",
            "shortName": "5th SincellTE",
            "description": "This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis  with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.\r\n\r\nAll the classes will be taught in English",
            "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=27",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [],
            "keywords": [
                "Single-Cell Sequencing",
                "long read sequencing",
                "spatial transcriptomics"
            ],
            "prerequisites": [
                "Master",
                "Autre (Diplôme universitaire, école d'ingénieur ...)"
            ],
            "openTo": "Everyone",
            "accessConditions": "Participants must have prior experience on NGS data analysis with everyday use of R and/or Python and good knowledge of Unix command line. Before the training, participants are advised to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets. \r\nIt is not necessary to have personal single-cell data to analyse.",
            "maxParticipants": 30,
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            "elixirPlatforms": [],
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                    "id": 4,
                    "name": "IFB",
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                },
                {
                    "id": 48,
                    "name": "Institut Pasteur",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Institut%20Pasteur/?format=api"
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            ],
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            "logo_url": "https://github.com/IFB-ElixirFr/Training/blob/main/logo_sincellte.png?raw=true",
            "updated_at": "2024-03-20T16:00:20.423462Z",
            "type": "Training course",
            "start_date": "2024-10-20",
            "end_date": "2024-10-25",
            "venue": "Station Biologique",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "International",
            "trainers": [],
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            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2024-03-12",
            "registration_closing": "2024-05-07",
            "registration_status": "closed",
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        },
        {
            "id": 635,
            "name": "Introduction To Python - session 16/10/2024 - 17/10/2024",
            "shortName": "Introduction To Python - session 16/10/2024 - 17/10/2024",
            "description": "The Toulouse Genotoul bioinformatics platform, organizes a 2 days long training course for non computer scientist and biologists aiming at learning the foundation of Python programming. In this training you will learn the basics of programming (variables, functions, control structures such as “if” condition, “for” loop”), writing simple programs which read files, and write results to others. The training course does not require any knowledge in programming, but basic Linux/bash commands are required (cd, ls).\r\n\r\nThis training focuses on practice. It consists of modules with a large variety of exercises described hereunder (PROVISIONAL SCHEDULE):\r\n\r\nUsing a Jupyter notebook (Day 1).\r\nUsing variables (Day 1).\r\nBasic operations and functions (Day 1).\r\nReading a file, writing to a file (Day 1).\r\nCharacter string manipulation (Day 1).\r\nLists and dictionaries (Day 2).\r\nThe if and for controls (Day 2).\r\nBases of algorithms (Day 2).",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/python/",
            "is_draft": false,
            "costs": [],
            "topics": [
                "http://edamontology.org/topic_3307"
            ],
            "keywords": [
                "Python Language"
            ],
            "prerequisites": [
                "Linux/Unix"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 12,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api"
            ],
            "elixirPlatforms": [],
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                    "id": 15,
                    "name": "MIAT",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 22,
                    "name": "Genotoul-bioinfo",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api"
                }
            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2024-06-10T12:33:57.629350Z",
            "type": "Training course",
            "start_date": "2024-10-16",
            "end_date": "2024-10-17",
            "venue": "",
            "city": "castanet-tolosan",
            "country": "France",
            "geographical_range": "",
            "trainers": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api"
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            "trainingMaterials": [
                {
                    "id": 142,
                    "name": "Introduction to python",
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                }
            ],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2024-06-05",
            "registration_closing": "2024-10-08",
            "registration_status": "closed",
            "courseMode": "Online"
        },
        {
            "id": 613,
            "name": "Les langages de workflows pour une analyse bioinformatique reproductible - session 2024 / Workflow languages for reproducible bioinformatics analysis -2024 session",
            "shortName": "WF4bioinfo 2024",
            "description": "L’Institut Français de Bioinformatique (IFB) organise en partenariat avec iPOP-UP (représenté par EDC) une formation sur les langages de workflows en bioinformatique à destination des bioinformaticien·ne·s et des bioanalystes. La formation abordera les fondamentaux et les fonctionnalités avancées des deux langages Snakemake et Nextflow. Ces outils sont en effet devenus indispensables pour assurer la reproductibilité et l’efficacité des analyses bioinformatiques. La formation sera structurée en deux séquences :\r\n- une journée commune qui abordera les grands principes des gestionnaires de workflow, en particulier dans le domaine de la bioinformatique et en lien avec les infrastructures de calcul de type cluster et cloud proposés au sein de l’IFB \r\n- une  journée de session pratique  avec 1 atelier snakemake et 1 atelier nextflow en parallèle au choix des participants. Nous proposons aux participants qui le souhaitent de travailler sur leur propre workflow dans une approche “Bring your own script” avec l’aide de l’équipe pédagogique.",
            "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=29",
            "is_draft": false,
            "costs": [],
            "topics": [
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_0091"
            ],
            "keywords": [
                "FAIR",
                "Reproducibility",
                "Nextflow",
                "Snakemake"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 20,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api",
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                "https://catalogue.france-bioinformatique.fr/api/userprofile/804/?format=api"
            ],
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        {
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            "name": "Short-Read Alignment And Small Size Variants Calling - session 9/10/2024 - 10/10/2024",
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            "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
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            ],
            "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png",
            "updated_at": "2024-06-10T12:36:32.603065Z",
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            "start_date": "2024-10-09",
            "end_date": "2024-10-10",
            "venue": "",
            "city": "castanet-tolosan",
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            "registration_closing": "2024-10-02",
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        {
            "id": 633,
            "name": "Cluster - session 08/10/2024",
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            "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/",
            "is_draft": false,
            "costs": [
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                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [],
            "keywords": [
                "Linux",
                "Cluster"
            ],
            "prerequisites": [
                "Linux/Unix"
            ],
            "openTo": "Everyone",
            "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.",
            "maxParticipants": 12,
            "contacts": [
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            ],
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            ],
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            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2024-06-05T09:19:16.493620Z",
            "type": "Training course",
            "start_date": "2024-10-08",
            "end_date": "2024-10-08",
            "venue": "",
            "city": "castanet-tolosan",
            "country": "France",
            "geographical_range": "",
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            "trainingMaterials": [
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                    "name": "Cluster Slides",
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                {
                    "id": 140,
                    "name": "TP Cluster",
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            ],
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            "realisation_status": "past",
            "registration_opening": "2024-06-05",
            "registration_closing": "2024-10-01",
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        },
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            "name": "LINUX - session 07/10/2024",
            "shortName": "",
            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands  (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2-2/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
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            ],
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            "updated_at": "2024-06-05T09:15:55.325587Z",
            "type": "Training course",
            "start_date": "2024-10-07",
            "end_date": "2024-10-07",
            "venue": "",
            "city": "castanet-tolosan",
            "country": "France",
            "geographical_range": "National",
            "trainers": [
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            "trainingMaterials": [
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                    "id": 138,
                    "name": "Linux TP",
                    "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20TP/?format=api"
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            ],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2024-06-05",
            "registration_closing": "2024-10-01",
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        },
        {
            "id": 631,
            "name": "Using sed and awk to modify large large text files - session 03/10/2024",
            "shortName": "",
            "description": "This “Sed and AWK to modify large text files” training session is organized by the Genotoul bioinfo platform.\r\n\r\nThe Linux sed command is a powerful and very fast text editor without an interface. Sed can select, substitute, add, delete, and modify text in files and streams. Sed relies heavily on regular expressions for pattern matching and text selection. We’ll manipulate regexes and the sed command to modify and filter several type of file often used in bioinformatics.\r\n\r\nAWK enables to easily process columns in large text files but is also a quite powerfull programming language. This training session aims at introducing you AWK principles. You will learn about variables, operators and functions useful to manipulate very large files. \r\n\r\nFor example you can use AWK to generate your unix command lines to be launched on the cluster. AWK enables to process millions of lines in text files. The course includes short feature presentations between long hands-on sessions in which you will be able to understand the global ideas as well as details.",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/using-sed-and-awk-to-modify-large-text-files/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [],
            "keywords": [
                "Programming Languages & Computer Sciences"
            ],
            "prerequisites": [
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            ],
            "openTo": "Everyone",
            "accessConditions": "",
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            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2024-06-04T07:39:04.387849Z",
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            "city": "castanet-tolosan",
            "country": "France",
            "geographical_range": "National",
            "trainers": [
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            "trainingMaterials": [
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