Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=360&ordering=accessConditions
{ "count": 659, "next": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=380&ordering=accessConditions", "previous": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=340&ordering=accessConditions", "results": [ { "id": 21, "name": "Cycle « Initiation à la bioinformatique » - Module 3/4 : Prédiction de gènes et annotation de protéines", "shortName": "", "description": "Formation \"Prédiction de gènes et annotation de protéines\"", "homepage": "https://wikis.univ-lille1.fr/bilille/formation", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/logo_bilille_complet_120_120_7.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-02-16", "end_date": "2017-02-17", "venue": "", "city": "Université de Lille", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 3, "name": "Galaxy4Bioinformatics", "shortName": "", "description": "Formation aux bonnes pratiques d'intégration d'outils sous Galaxy", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/logo-IFGGWG.2.0.vbd_.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2016-10-18", "end_date": "2016-10-20", "venue": "", "city": "Lyon", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 324, "name": "IFSBM (UFR medecine paris sud) : Big Data", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-13", "end_date": null, "venue": "", "city": "", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 165, "name": "Initiation to NGS Workflow Managers developed within the South Green Platform: Galaxy and TOGGLe", "shortName": "", "description": "This course provides introduction to workfow managers to quickly develop and run their own pipelines.", "homepage": "https://southgreenplatform.github.io/trainings//galaxyToggle/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-22", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 789, "name": "Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy - 2026", "shortName": "Analyse de données NGS sous Galaxy 2026", "description": "Objectifs pédagogiques\r\nConnaître les concepts et méthodes bioinformatiques utilisés pour l’analyse primaire de données issues de séquenceurs nouvelle génération (NGS). Savoir effectuer un alignement sur un génome de référence, un assemblage de novo d’un génome bactérien\r\n\r\nProgramme\r\nThéorie\r\n* Présentation des différents types de technologies de séquençage (lectures longues et courtes)\r\n\r\nPratique : Analyse des données de séquençage d’un génome bactérien\r\n* Contrôle qualité\r\n* Assemblage de-novo\r\n* Nettoyage des données\r\n* Assemblage\r\n* Visualisation et statistiques sur l’assemblage\r\n* Alignement de lectures sur un génome de référence et visualisation\r\nTous les TPs seront réalisés sous l’environnement d’exécution de traitements Galaxy.", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0102", "http://edamontology.org/topic_0092", "http://edamontology.org/topic_0196", "http://edamontology.org/topic_3168" ], "keywords": [ "Galaxy", "NGS" ], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" }, { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2026-02-12T10:33:27.380562Z", "type": "Training course", "start_date": "2026-03-26", "end_date": "2026-03-26", "venue": "", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "future", "registration_opening": null, "registration_closing": "2026-03-12", "registration_status": "open", "courseMode": "Onsite" }, { "id": 587, "name": "Analyse statistique de données RNA-Seq - Recherche des régions d’intérêt différentiellement exprimées (2024)", "shortName": "Analyse statistique de données RNA-Seq (2024)", "description": "Objectifs pédagogiques\r\n* Se sensibiliser aux concepts et méthodes statistiques pour l’analyse de données transcriptomiques de type RNA-Seq.\r\n* Comprendre le matériel et méthodes (normalisation et tests statistiques) d’un article.\r\n* Réaliser une étude transcriptomique avec R dans l’environnement RStudio.\r\n\r\nProgramme\r\n* Planification expérimentale des expériences RNA-Seq (identification des biais, répétitions, biais contrôlables).\r\n* Normalisation et analyse différentielle : recherche de “régions d’intérêt” différentiellement exprimées (modèle linéaire généralisé).\r\n*Prise en compte de la multiplicité des tests.\r\n\r\nLe cours sera illustré par différents exemples. Un jeu de données à deux facteurs sera analysé avec les packages R DESeq2 et edgeR dans l’environnement RStudio.", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_3308", "http://edamontology.org/topic_0203", "http://edamontology.org/topic_3170" ], "keywords": [ "Statistical differential analysis", "RNA-seq" ], "prerequisites": [ "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2024-01-18T14:52:00.895148Z", "type": "Training course", "start_date": "2024-06-10", "end_date": "2024-06-11", "venue": "https://migale.inrae.fr/how-to-come", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/776/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/745/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-01-08", "registration_closing": "2024-05-27", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 325, "name": "Formation librairie GATB", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-06-15", "end_date": null, "venue": "", "city": "Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 90, "name": "Annotation of transposable elements (in the frame of Genome assembly and annotation course", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-06-21", "end_date": null, "venue": "", "city": "Ljubjana (Slovenie)", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 387, "name": "Initiation to NGS Workflow Managers developed within the South Green Platform: Galaxy and TOGGLe", "shortName": "", "description": "This course introduces the 2 commonly used workflow managers in the South Green Bioformatics platform, both in a theoretical and practical way, with hands-on practice sessions. It will help you to quickly develop and run your own pipelines using these tools through an graphical user or command-line interface.\n \nPrerequisites\nPrior knowledge of workflow managers not necessary Basic knowledge of Linux (Linux for dummies required) - TOGGLe practical\n\nProgram\nWhy using a workflow manager to analyse data ?\nHow to perform an analysis ?\nHow to create your own workflow ?\nHow to execute it?\nUse case\n\n\nLearning objectives\nExplaining what Workflow Managers are,\n\tin which way they differ from each other.\nHow you can use them in your research.\nCreating your own workflow\nAnalysing your NGS data with Galaxy and TOGGLe\n\n\nInstructors\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\nSebastien Ravel (SR) - sebastien.ravel@cirad.fr\nChristine Tranchant (CT) - christine.tranchant@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//galaxyToggle/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-22", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 334, "name": "Phylogénie moléculaire", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-10-08", "end_date": "2017-10-12", "venue": "", "city": "Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 632, "name": "LINUX - session 07/10/2024", "shortName": "", "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.", "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2-2/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-06-05T09:15:55.325587Z", "type": "Training course", "start_date": "2024-10-07", "end_date": "2024-10-07", "venue": "", "city": "castanet-tolosan", "country": "France", "geographical_range": "National", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api" ], "trainingMaterials": [ { "id": 137, "name": "Linux slides - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20slides%20-%20Genotoul-bioinfo/?format=api" }, { "id": 138, "name": "Linux TP - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20TP%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-06-05", "registration_closing": "2024-10-01", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 520, "name": "Linux - Initiation / Linux for Beginners - Session 1 - 2023", "shortName": "Linux Init 2023 S1", "description": "Objectifs :\r\n- Être capable de se connecter à une machine Linux\r\n- Être capable de transférer des fichiers à partir de/vers une machine Linux\r\n- Être capable de naviguer dans le système de fichiers\r\n- Être capable d’examiner le contenu d’un fichier et de gérer l’espace disque\r\n- Être capable de gérer les droits d’accès aux répertoires et aux fichiers.\r\n- Être capable de gérer le lancement, l’interruption et l’arrêt de processus", "homepage": "http://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [ "Linux", "Operating systems" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 16, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:27:12.074339Z", "type": "Training course", "start_date": "2023-06-20", "end_date": "2023-06-20", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-02-22", "registration_closing": "2023-05-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 521, "name": "Linux Avancé / Advanced Linux - Session 1 - 2023", "shortName": "Advanced Linux 2023 S1", "description": "Objectifs\r\n- Savoir utiliser des commandes linux pour traiter de grosses quantités de données : fichiers\r\nvolumineux et/ou en grands nombres : recherche, comptage, tri, fusion, …\r\nProgramme\r\n- Introduction\r\n- Décrire (wc, grep)\r\n- Manipuler des fichiers tabulés (cut, sort)\r\n- Rechercher (grep)\r\n- Redirection / Pipeline (stdin, stdout, stderr, >, 2>, &&, |)\r\n- Recherche avancée : notion d’expression régulière (egrep)\r\n- Rechercher/Remplacer haut débit (tr, sed)\r\n- Manipulation de fichier tabulé – mode avancé (awk)\r\n- Traitement séquentiel de nombreux fichiers (for)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:27:01.721228Z", "type": "Training course", "start_date": "2023-06-21", "end_date": "2023-06-21", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-02-22", "registration_closing": "2023-05-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 528, "name": "LINUX - session 17/04/2023", "shortName": "", "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.", "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2-2/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2023-05-17T10:04:05.719947Z", "type": "Training course", "start_date": "2023-04-17", "end_date": "2023-04-17", "venue": "", "city": "", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-04-04", "registration_closing": "2023-04-12", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 562, "name": "Introduction to Oxford Nanopore Technology data analyses 2023", "shortName": "Introduction to ONT data analyses 2023", "description": "This course offers an introduction to ONT data analysis. It includes 5 issues: basecalling, reads quality control, assemblies and polishing/correction, contig quality and structural variants detection.", "homepage": "https://southgreenplatform.github.io/trainings//ont/", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3673", "http://edamontology.org/topic_0196", "http://edamontology.org/topic_3168" ], "keywords": [], "prerequisites": [ "Linux and knowledge of NGS formats" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 15, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T15:32:22.626277Z", "type": "Training course", "start_date": "2023-05-25", "end_date": "2023-05-26", "venue": "", "city": "Montpellier", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/733/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/771/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/519/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/545/?format=api" ], "trainingMaterials": [ { "id": 1, "name": "SG-ONT-slides", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/SG-ONT-slides/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 136, "name": "Fouille de données et analyse de données NGS avec R", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-11-19", "end_date": "2017-11-22", "venue": "", "city": "CBiB", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 522, "name": "Utilisation du cluster - SLURM / Cluster usage - SLURM - Session 1 - 2023", "shortName": "Cluster SLURM 2023 S1", "description": "Objectifs\r\n- Disposer des concepts et de bonnes pratiques d’utilisation des ressources de calcul.\r\n- Être capable d’utiliser les ressources de calcul de la plateforme en toute autonomie.\r\nProgramme\r\n- Introduction : les équipements (calcul et stockage), espaces de travail, les outils et les données.\r\n- Calcul parallèle : concepts, ressources\r\n- Soumission de jobs (srun, sbatch)\r\n- Monitorer, vérifier, controler les jobs (squeue, scontrol, scancel, sacct).\r\n- Base de l’optimisation d’un job\r\n- Solutions de parallélisation des jobs : (--array)", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 65, "name": "SBR - Roscoff Marine Station", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api" } ], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:26:47.718424Z", "type": "Training course", "start_date": "2023-06-22", "end_date": "2023-06-22", "venue": "", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-02-22", "registration_closing": "2023-05-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 669, "name": "Using sed and awk to modify large large text files - 13 March 2025", "shortName": "", "description": "Many analysis generate large result text files which have to be checked, merged, split, reduced. Several tools have been developed and are available on Unix to do this, including sed and AWK. During this course you will be trained to process large files with sed and AWK. Sed is tool enabling to select and process lines. You can easily insert, delete, modify, append lines to very large files with millions of lines. AWK will enable to perform more fine tuned file modifications based on columns. It includes also more mathematical and string functions. The course is based mainly on exercises with small sections presenting concepts and commands.", "homepage": "http://bioinfo.genotoul.fr/index.php/events/modify-and-extract-information-from-large-text-files-day-2-3/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/338/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-12-06T20:47:41.482360Z", "type": "Training course", "start_date": "2025-03-13", "end_date": "2025-03-13", "venue": "", "city": "castanet-tolosan", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [ { "id": 146, "name": "Processing large files with sed awk - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Processing%20large%20files%20with%20sed%20awk%20%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-12-06", "registration_closing": "2025-03-05", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 588, "name": "Introduction au text-mining avec AlvisNLP (session 2024)", "shortName": "Introduction to text-mining with AlvisNLP (2024)", "description": "Objectifs pédagogiques\r\nCette formation est dédiée à l’analyse de données textuelles (text-mining). L’objectif est l’acquisition des principales techniques pour la Reconnaissance d’Entités Nommées (REN) à partir de textes. Les entités nommées étudiées dans cette formation sont des objets ou concepts d’intérêts mentionnés dans les articles scientifiques ou les champs en texte libre (taxons, gènes, protéines, marques, etc.).\r\n\r\nLes participants vont acquérir les compétences pratiques nécessaires pour effectuer de façon autonome une première approche pour une application de text-mining. Le format est celui de Travaux Pratiques utilisant AlvisNLP, un outil pour la création de pipelines en text-mining développé par l’équipe Bibliome de l’unité MaIAGE. La formation s’adresse à des chercheurs et ingénieurs en (bio)-informatique ou en maths-info-stats appliquées\r\n\r\nProgramme\r\n* Présentation du text-mining et de la Reconnaissance des Entités Nommées (REN)\r\n* Travaux Pratiques sur des techniques de REN en utilisant AlvisNLP\r\n* Projection de lexiques\r\n* Application de patrons\r\n* Apprentissage automatique", "homepage": "https://documents.migale.inrae.fr/trainings.html", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0605", "http://edamontology.org/topic_3474" ], "keywords": [ "Text mining" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 88, "name": "BioinfOmics", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api" } ], "organisedByTeams": [ { "id": 10, "name": "MIGALE", "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api" } ], "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png", "updated_at": "2024-01-18T14:58:57.757098Z", "type": "Training course", "start_date": "2024-06-12", "end_date": "2024-06-13", "venue": "https://migale.inrae.fr/how-to-come", "city": "Jouy-en-Josas", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/779/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/744/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-01-08", "registration_closing": "2024-05-29", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 384, "name": "Introduction to High-performance computing", "shortName": "", "description": "This course offers an introduction on how to work with HPC Southgreen clusters. It is intended for new users, with the goals of improving user productivity and minimizing the obstacles. The HPC Southgreen cluster are presented, together with the tools to be able to use it. Module load notion, interactive usage and batch jobs submittions will be developped.\nPrerequisites\nLinux Basics\n\nProgram\nIntroduction to HPCs architecture\nDiscover Sun grid Engine (SGE)\nData Management on clusters\nInteractive Usage\nSubmit batch jobs\n\n\nLearning objectives\nAfter this course, participants should be able to:\nUse the HPC resources interactively\nManage data copies\nUse module load\nsubmit batch jobs\n\n\nInstructors\n\n\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat(BP) - bertrand.pitollat@cirad.fr\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//HPC/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-14", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null } ] }
