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            "id": 277,
            "name": "Cycle « Analyse de données de séquençage à haut-débit » - Module 3/5 : Analyses RNA-seq - partie 1 (bioinformatique)",
            "shortName": "",
            "description": "bilille propose chaque année un cycle de formation d'introduction à l'analyse des données de séquençage à haut débit.\r\nCe cycle est composé de 5 modules, à la carte : \r\n- Module 1: Analyses ADN\r\n- Module 2: Analyses de variants\r\n- Module 3: Analyses RNA-seq, bioinformatique\r\n- Module 4: Analyses RNA-seq, biostatistique\r\n- Module 5: Métagénomique\r\nLes fiches descriptives sont accessibles sur le site de bilille. Chaque module comprend des présentations générales et des séances pratiques sur ordinateur, avec Galaxy.\r\nLes objectifs du module 3 sont :\r\n- Savoir réaliser une analyse transcriptomique par RNA-seq avec ou sans (de novo) génome de référence à l’aide du portail Galaxy\r\n- Avoir un regard critique sur la qualité des lectures obtenues par le séquenceur\r\n- Connaître et savoir paramétrer les outils nécessaires à l’analyse",
            "homepage": "https://bilille.univ-lille.fr/training/training-offer",
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                "NGS Data Analysis",
                "Analysis of RNAseq data",
                "Gene expression differential analysis",
                "Transcript and transcript variant analysis",
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                "NGS Sequencing Data Analysis"
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            "accessConditions": "Etre familier avec la plate-forme web Galaxy (idéalement avoir suivi la formation bilille « Initiation à Galaxy »)\r\nAvoir suivi le module 1/5 « Analyses ADN » de ce cycle ou toute autre formation permettant de justifier de connaissances sur les données de séquençage haut débit et leur alignement.",
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                    "id": 56,
                    "name": "INSERM",
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                    "id": 66,
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            "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png",
            "updated_at": "2024-12-09T17:38:45.171785Z",
            "type": "Training course",
            "start_date": "2019-06-12",
            "end_date": "2019-06-13",
            "venue": "",
            "city": "Villeneuve d'Ascq",
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            "id": 259,
            "name": "Advanced sequence analysis",
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                "Analysis of RNAseq data",
                "Sequence Algorithm",
                "Bioinformatics & Biomedical",
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                "Variant analysis",
                "Transcriptomics (RNA-seq)",
                "Genomics (DNA-seq)",
                "Sequence annotation",
                "Pattern matching",
                "Multiple sequence alignment"
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            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2019-05-13",
            "end_date": null,
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            "name": "Rôles multiples de l’ARN",
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            "homepage": "https://www.pasteur.fr/fr/enseignement/programmes-doctoraux-et-cours/cours-paste…",
            "is_draft": false,
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                "Analysis of RNAseq data",
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                "NGS Sequencing Data Analysis"
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                "Master"
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            "openTo": "Internal personnel",
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            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2019-02-10",
            "end_date": "2019-02-21",
            "venue": "",
            "city": "institut Pasteur",
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            "id": 255,
            "name": "Analyse statistique RNA-seq sous Galaxy",
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            "homepage": "http://migale.jouy.inra.fr/",
            "is_draft": false,
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                "Analysis of RNAseq data",
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            "updated_at": "2022-06-02T11:50:50.627601Z",
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            "name": "Analysis of NGS data with R",
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            "description": "https://cnrsformation.cnrs.fr/stage-19025-Analyses-NGS-avec-R.html?axe=98\n",
            "homepage": "https://cnrsformation.cnrs.fr/pdf/16147.pdf",
            "is_draft": false,
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            "keywords": [
                "NGS Data Analysis",
                "Analysis of RNAseq data",
                "Statistical Tests",
                "R Language",
                "Variant analysis",
                "Knowledge mining",
                "Statistical Genetics",
                "Transcriptomics (RNA-seq)",
                "Genomics (DNA-seq)"
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            "openTo": "Internal personnel",
            "accessConditions": "CNRS fee-based training\n",
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            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
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            "id": 264,
            "name": "Bioinformatique pour le traitement de données de séquençage (NGS)",
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            "description": "\nLes objectifs sont :\n- Savoir choisir les outils d'analyse\n- Etre autonome pour effectuer un pipeline d'analyse\n- Comprendre les principes des méthodes d'analyse\n- Savoir manipuler les fichiers de séquences : préparation et filtration\n- Etre capable d'évaluer la qualité des données\n- Savoir analyser avec ou sans génome de référence\nhttps://cnrsformation.cnrs.fr/\n\n",
            "homepage": "http://cnrsformation.cnrs.fr/stage-17010-Bioinformatique-pour-le-traitement-de-d…",
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                "Methodology",
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                "Analysis of RNAseq data",
                "Assembly of genomes and transcriptomes",
                "Read alignment on genomes",
                "Variant analysis",
                "Complete genomes",
                "Transcriptomics (RNA-seq)",
                "Genomics (DNA-seq)",
                "NGS Sequencing Data Analysis"
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            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "S'acquitter des frais d'inscription, notions de base en informatique : fichiers, répertoire..., notions du système linux et des lignes de commandes, niveau master\n",
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            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2019-03-24",
            "end_date": "2019-03-28",
            "venue": "",
            "city": "Montpellier",
            "country": "",
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            "id": 254,
            "name": "Traitements bioinfo RNA-seq ",
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            "description": "\nObjectifs\n\nConnaitre les concepts et méthodes bioinformatiques utilisées pour l’analyse de données RNA-Seq eucaryote et procaryote.\n\n \nProgramme\n\nThéorie\nBases biologiques des études d’expression\nSéquençage NGS et RNA-Seq, présentation des différents types de séquenceurs\nMéthodes d’alignements spécifiques au RNA-Seq\nReconstruction de transcrits\nAssemblage de novo de transcriptomes\nQuantification\n \nPratique\nTP sur des données de type euraryote\nContrôle qualité\nNettoyage des données\nAlignement sur un génome de référence et épissage\nVisualisation de l’alignement\nDécouverte de nouveaux transcrits\nObtention d’un tableau de comptage\n \nLien avec d'autres modules \nL'analyse statistique des résultats du type d’analyses bioinformatiques effectuées dans ce module est traitée dans le module 16 [Stats & RNA-seq.\n",
            "homepage": "http://migale.jouy.inra.fr/",
            "is_draft": false,
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            "topics": [],
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                "NGS Data Analysis",
                "Analysis of RNAseq data",
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            "end_date": null,
            "venue": "",
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            "country": "",
            "geographical_range": "",
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            "id": 378,
            "name": "RNASeq alignment and transcripts assemblies",
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            "description": "This training session is designed to help you deal with sequences from the SGS (Second Generation Sequencing) particularly Illumina platforms (GAIIx, HiSeq). You will discover the new sequence file formats, learn about the usual biases of this data type and run different kind of analysis such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of the genes and transcripts. Organized jointly by the MIAT unit and bioinfo genotoul platforms.\n",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-and-transcripts-ass…",
            "is_draft": false,
            "costs": [
                "Free"
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                "Analysis of RNAseq data"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n",
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            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2019-10-16",
            "end_date": "2019-10-17",
            "venue": "",
            "city": "Auzeville-Tolosane",
            "country": "",
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        },
        {
            "id": 499,
            "name": "Linux - Initiation / Linux for Beginners - 2022 Session 2",
            "shortName": "Linux Init - 2022 Session 2",
            "description": "Objectifs :\r\n- Être capable de se connecter à une machine Linux\r\n- Être capable de transférer des fichiers à partir de/vers une machine Linux\r\n- Être capable de naviguer dans le système de fichiers\r\n- Être capable d’examiner le contenu d’un fichier et de gérer l’espace disque\r\n- Être capable de gérer les droits d’accès aux répertoires et aux fichiers.\r\n- Être capable de gérer le lancement, l’interruption et l’arrêt de processus",
            "homepage": "http://abims.sb-roscoff.fr/training/courses",
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                "http://edamontology.org/topic_3316"
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                "Linux",
                "Operating systems"
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                    "id": 65,
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            ],
            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2023-05-17T09:55:01.623771Z",
            "type": "Training course",
            "start_date": "2022-11-21",
            "end_date": "2022-11-21",
            "venue": "Station Biologique de Roscoff",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "",
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        {
            "id": 703,
            "name": "Python scripts for bioinformatics and Linux - Session 2025",
            "shortName": "Scripts en Python pour la bioinformatique et environnement Linux",
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            "homepage": "https://cnrsformation.cnrs.fr/linux-et-script-pour-bioinformatique",
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            "costs": [
                "1200 €"
            ],
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            "keywords": [
                "Linux",
                "Python Language"
            ],
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                    "id": 7,
                    "name": "ATGC",
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            ],
            "logo_url": null,
            "updated_at": "2025-02-11T08:50:54.103356Z",
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            "start_date": "2025-11-04",
            "end_date": "2025-11-07",
            "venue": "",
            "city": "Montpellier",
            "country": "France",
            "geographical_range": "",
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            "computingFacilities": [],
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            "registration_closing": "2025-10-20",
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            "courseMode": "Onsite"
        },
        {
            "id": 261,
            "name": "Cluster",
            "shortName": "",
            "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/",
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            ],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/bioinfo_logo-RVB_4.jpg",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
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            "country": "",
            "geographical_range": "",
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        },
        {
            "id": 478,
            "name": "Using sed and awk to modify large large text files - 2022/03/16",
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            "homepage": "http://bioinfo.genotoul.fr/index.php/events/modify-and-extract-information-from-large-text-files-day-2-3/",
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                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
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                "Programming Languages & Computer Sciences",
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                "Linux",
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            "updated_at": "2025-01-23T13:51:59.887045Z",
            "type": "Training course",
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            "city": "Roscoff",
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                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
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            "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/",
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            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
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            "keywords": [
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            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
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            "openTo": "Everyone",
            "accessConditions": "You need to register (via the website) and pay 170 euros (+ 20% taxes (TVA)) a day for academic, 150  € no VAT charged for INRAE and 550 euros (+ 20% taxes (TVA)) a day for a private.",
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        {
            "id": 529,
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            "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.",
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                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
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            "updated_at": "2023-05-17T10:03:57.925413Z",
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            "end_date": "2023-04-18",
            "venue": "",
            "city": "",
            "country": "",
            "geographical_range": "",
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        },
        {
            "id": 260,
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            "shortName": "",
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            "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2/",
            "is_draft": false,
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            "prerequisites": [],
            "openTo": "Internal personnel",
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            ],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/bioinfo_logo-RVB_3.jpg",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
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            "end_date": null,
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            "city": "Auzeville-Tolosane",
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        },
        {
            "id": 512,
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            "homepage": "https://cnrsformation.cnrs.fr/liste-stages-176-Bioinformatique.html",
            "is_draft": false,
            "costs": [
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            ],
            "topics": [],
            "keywords": [
                "Linux",
                "Python Language"
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            "prerequisites": [],
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            "logo_url": "http://www.atgc-montpellier.fr/pictures/ATGClogo.svg",
            "updated_at": "2023-10-05T12:36:19.174965Z",
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            "end_date": "2023-10-25",
            "venue": "",
            "city": "Montpellier",
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            "geographical_range": "",
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        },
        {
            "id": 520,
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            "homepage": "http://abims.sb-roscoff.fr/training/courses",
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            ],
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            ],
            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2023-05-17T09:27:12.074339Z",
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            "end_date": "2023-06-20",
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            "geographical_range": "",
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        {
            "id": 537,
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            ],
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            "keywords": [
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            "openTo": "Everyone",
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                    "id": 94,
                    "name": "Université Clermont Auvergne",
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            "updated_at": "2023-06-14T10:22:28.365980Z",
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            "end_date": "2023-07-17",
            "venue": "Turing Building\r\nRoom A09",
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}