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            "name": "Initiation to NGS Workflow Managers developed within the South Green Platform: Galaxy and TOGGLe",
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            "description": "This course introduces the 2 commonly used workflow managers in the South Green Bioformatics platform, both in a theoretical and practical way, with hands-on practice sessions. It will help you to quickly develop and run your own pipelines using these tools through an graphical user or command-line interface.\n \nPrerequisites\nPrior knowledge of workflow managers not necessary Basic knowledge of Linux (Linux for dummies required) - TOGGLe practical\n\nProgram\nWhy using a workflow manager to analyse data ?\nHow to perform an analysis ?\nHow to create your own workflow ?\nHow to execute it?\nUse case\n\n\nLearning objectives\nExplaining what Workflow Managers are,\n\tin which way they differ from each other.\nHow you can use them in your research.\nCreating your own workflow\nAnalysing your NGS data with Galaxy and TOGGLe\n\n\nInstructors\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\nSebastien Ravel (SR) - sebastien.ravel@cirad.fr\nChristine Tranchant (CT) - christine.tranchant@ird.fr\n\n",
            "homepage": "https://southgreenplatform.github.io/trainings//galaxyToggle/",
            "is_draft": false,
            "costs": [
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            "logo_url": "",
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            "city": "Centre IRD, Montpellier",
            "country": "",
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            "id": 334,
            "name": "Phylogénie moléculaire",
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            "description": "",
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            ],
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            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-10-08",
            "end_date": "2017-10-12",
            "venue": "",
            "city": "Montpellier",
            "country": "",
            "geographical_range": "",
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            "id": 260,
            "name": "Linux/Unix",
            "shortName": "",
            "description": "This training presents the following points: how to access the platform, how to use a Unix environment, how to create and manipulate and transfer files with command line from your computer toward our cluster and vice versa. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2/",
            "is_draft": false,
            "costs": [
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            ],
            "topics": [],
            "keywords": [
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                "Cluster"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n",
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                    "id": 22,
                    "name": "Genotoul-bioinfo",
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            ],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/bioinfo_logo-RVB_3.jpg",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2019-10-13",
            "end_date": null,
            "venue": "",
            "city": "Auzeville-Tolosane",
            "country": "",
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            "id": 41,
            "name": "Analyse bioinformatique de données RNA-Seq sous Galaxy",
            "shortName": "",
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            "is_draft": false,
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            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-03-14",
            "end_date": null,
            "venue": "",
            "city": "Jouy en Josas",
            "country": "",
            "geographical_range": "",
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            "realisation_status": "past",
            "registration_opening": null,
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        },
        {
            "id": 271,
            "name": "Intégration d'outils dans Galaxy",
            "shortName": "",
            "description": "Galaxy (https://galaxyproject.org/) est une plateforme permettant d’intégrer et d’exécuter via une interface graphique des outils bioinformatiques, normalement utilisables en ligne de commande. Galaxy permet ainsi de faciliter l’utilisation de ces outils par tous, dans un environnement contrôlé,mais aussi de favoriser la reproductibilité des analyses (workflows, …).\nActuellement, > 3 750 outils (disponibles sur https://toolshed.g2.bx.psu.edu/) peuvent être intégrés à Galaxy. Mais tous les outils bioinformatiques dont vous pouvez avoir besoin ne sont pas intégrés dans \nl’environnement Galaxy. Et vous devez ainsi parfois renoncer à utiliser Galaxy et ses avantages pour traiter vos données.\n\nUn workshop est organisé à Clermont-Ferrand le Mercredi 25 Mai 2016. \nN’hésitez pas à faire circuler cette information aux personnes potentiellement intéressées.\nMerci par avance.\nBérénice BATUT\n\n",
            "homepage": "https://brnice.typeform.com/to/vCq4AV",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "Galaxy"
            ],
            "prerequisites": [
                "Autre (Diplôme universitaire, école d'ingénieur ...)"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "",
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            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2016-05-24",
            "end_date": null,
            "venue": "",
            "city": "Clermont-Ferrand - Université d'Auvergne",
            "country": "",
            "geographical_range": "",
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            "realisation_status": "past",
            "registration_opening": null,
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        },
        {
            "id": 51,
            "name": "Cours MIGALE - Analyse de données métagénomiques 16S",
            "shortName": "",
            "description": "Formation dédiée à l'analyse de données de type \"métagénomique amplicon\" issues des technolo-gies de séquençage 454 et Illumina.",
            "homepage": "http://migale.jouy.inra.fr/",
            "is_draft": false,
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            "openTo": "Internal personnel",
            "accessConditions": "",
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            "organisedByTeams": [
                {
                    "id": 10,
                    "name": "MIGALE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api"
                }
            ],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/logo-inra_0_0_2.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-03-27",
            "end_date": null,
            "venue": "",
            "city": "Jouy en Josas",
            "country": "",
            "geographical_range": "",
            "trainers": [],
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        },
        {
            "id": 255,
            "name": "Analyse statistique RNA-seq sous Galaxy",
            "shortName": "",
            "description": "\nObjectifs\n\nSe sensibiliser aux concepts et méthodes statistiques pour l'analyse de données transcriptomiques de type RNA-Seq.\nComprendre le matériel et méthodes (normalisation et tests statistiques) d'un article\ndu domaine.\nComprendre les particularités liées à la nature des données.\n\n \n \nProgramme\n\nPlanification expérimentale des expériences RNA-Seq (identification des biais, répétitions, biais contrôlables).\nNormalisation et analyse différentielle : recherche de \"régions d'intérêt\" différentiellement exprimées (modèle linéaire généralisé).\nPrise en compte de la multiplicité des tests.\nLe cours sera illustré par différents exemples et un jeu de données sera traité à l'aide du package R SARTools (basé sur les packages R DESeq2 et edgeR) dans les environnements Galaxy et RStudio.\n",
            "homepage": "http://migale.jouy.inra.fr/",
            "is_draft": false,
            "costs": [],
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            "keywords": [
                "NGS Data Analysis",
                "Analysis of RNAseq data",
                "Galaxy"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n",
            "maxParticipants": null,
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            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
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            "city": "jouy en josas",
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}