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            "shortName": "",
            "description": "This course offers to develop and enhance advanced Linux shell command line and scripting skills for the processing and analysis of NGS data. We will work on a HPC server and use linux powerful commands to allow to analyze big amount of biological data.",
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            "updated_at": "2023-12-04T15:37:17.765878Z",
            "type": "Training course",
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            "end_date": "2023-05-16",
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            "city": "Montpellier",
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                "https://catalogue.france-bioinformatique.fr/api/userprofile/773/?format=api",
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            "id": 22,
            "name": "Metagenomic amplicon analysis/Frogs",
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            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-02-19",
            "end_date": "2017-02-22",
            "venue": "",
            "city": "Salle de formation Inra",
            "country": "",
            "geographical_range": "",
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        },
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            "id": 378,
            "name": "RNASeq alignment and transcripts assemblies",
            "shortName": "",
            "description": "This training session is designed to help you deal with sequences from the SGS (Second Generation Sequencing) particularly Illumina platforms (GAIIx, HiSeq). You will discover the new sequence file formats, learn about the usual biases of this data type and run different kind of analysis such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of the genes and transcripts. Organized jointly by the MIAT unit and bioinfo genotoul platforms.\n",
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                "Analysis of RNAseq data"
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            "type": "Training course",
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            "end_date": "2019-10-17",
            "venue": "",
            "city": "Auzeville-Tolosane",
            "country": "",
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            "name": "Analyse de données NGS dédiée à la génomique végétale en Afrique de l'Ouest",
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            "description": "Les avancées spectaculaires des technologies de séquençage de 2ème et 3ème génération sont une véritable révolution pour la recherche en science de la vie. Ces techniques permettent le séquençage en quelques semaines de génomes entiers d’organismes complexes, générant une explosion du volume de données génomiques. \n\t\t\tToutefois l’analyse de telles masses d’informations nécessite des compétences en linux, en bioinformatique ainsi qu’une bonne connaissance et maîtrise de nombreux algorithmes et logiciels. La réalisation de ces analyses nécessite également l’accès à des ressources de calcul telles que des clusters de calcul. \n\t\t\tLe DP IAVAO et le LMI LAPSE en collaboration avec la plateforme bioinformatique South Green organisent, du 4 au 12 Octobre 2018, une formation en bioinformatique dédié à l’analyse de données de séquençage dont les objectifs sont de présenter les technologies de séquençage et les différentes analyses bioinformatiques pour exploiter au mieux cette masse de données afin de pouvoir réaliser des projets génomiques à grande échelle sur leurs modèles (plantes et pathogènes).\nPrérequis\nAucun\n\nProgramme\nLinux et lignes de commandes \nInitiation à l’utilisation du cluster du CERAAS \nPrésentation des technologies de séquençages \nAppel de SNP sur des données WGS \nPost analyse de données de SNPs\nOutils Genome Harvest \n\n\nObjectifs\nAprès la formation, les participants seront capables de :\nse connecter à un cluster Linux\nlancer des programmes/analyses bioinformatiques\ndéfinir les étapes pour analyser des données de séquençage\nanalyser des données de séquençage\nutiliser des gestionnaires de workflow tel que Galaxy ou TOGGLe\n\n\nInstructors\nChristine Tranchant (CT) - christine.tranchant@ird.fr\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat (BP) - bertrand.pitollat@cirad.fr\nFrançois Sabot (SB) - francois.sabot@ird.fr\nManuel Ruiz (MR) - manuel.ruiz@cirad.fr\nGautier Sarah (GS) - gautier.sarah@cirad.fr\n\n",
            "homepage": "https://southgreenplatform.github.io/trainings//ngsTrainings/",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
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                    "id": 12,
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                },
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                    "id": 14,
                    "name": "IAVAO",
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            "venue": "",
            "city": "CERAAS, Thiès (Sénégal)",
            "country": "",
            "geographical_range": "",
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}