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            "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.",
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                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
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                "http://edamontology.org/topic_2885"
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            ],
            "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png",
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            "type": "Training course",
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            "end_date": "2026-04-14",
            "venue": "",
            "city": "Castanet-Tolosan",
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            "registration_opening": "2026-01-14",
            "registration_closing": "2026-02-27",
            "registration_status": "closed",
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            "id": 339,
            "name": "Python avance",
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            "description": "",
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            ],
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            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
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            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-02-28",
            "end_date": null,
            "venue": "",
            "city": "Jouy en Josas",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
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        },
        {
            "id": 209,
            "name": "Introduction to R Language",
            "shortName": "",
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            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
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            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2019-05-20",
            "end_date": null,
            "venue": "",
            "city": "CBiB",
            "country": "",
            "geographical_range": "",
            "trainers": [],
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            "realisation_status": "past",
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        },
        {
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            "homepage": "https://abims.sb-roscoff.fr/training/courses",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [
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            ],
            "keywords": [],
            "prerequisites": [
                "Basic knowledge of R"
            ],
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            "accessConditions": "",
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                    "id": 4,
                    "name": "ABiMS",
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            ],
            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2023-05-17T09:27:31.911754Z",
            "type": "Training course",
            "start_date": "2023-06-01",
            "end_date": "2023-06-01",
            "venue": "",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "",
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            "registration_opening": "2023-02-22",
            "registration_closing": "2023-04-30",
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        },
        {
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            "description": "This course offers an introduction on how to work with HPC Southgreen clusters. It is intended for new users, with the goals of improving user productivity and minimizing the obstacles. The HPC Southgreen cluster are presented, together with the tools to be able to use it. Module load notion, interactive usage and batch jobs submittions will be developped.\nPrerequisites\nLinux Basics\n\nProgram\nIntroduction to HPCs architecture\nDiscover Sun grid Engine (SGE)\nData Management on clusters\nInteractive Usage\nSubmit batch jobs\n\n\nLearning objectives\nAfter this course, participants should be able to:\nUse the HPC resources interactively\nManage data copies\nUse module load\nsubmit batch jobs\n\n\nInstructors\n\n\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat(BP) - bertrand.pitollat@cirad.fr\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr​\n\n",
            "homepage": "https://southgreenplatform.github.io/trainings//HPC/",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
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            "organisedByTeams": [
                {
                    "id": 24,
                    "name": "South Green",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api"
                }
            ],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2018-03-14",
            "end_date": null,
            "venue": "",
            "city": "Centre IRD, Montpellier",
            "country": "",
            "geographical_range": "",
            "trainers": [],
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            "computingFacilities": [],
            "realisation_status": "past",
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        },
        {
            "id": 151,
            "name": "MOD2018",
            "shortName": "",
            "description": " Axée sur les technologies pour l'assemblage des génomes et sur les applications en Santé et en Environnement.",
            "homepage": "https://www.montpellier-omics-days.fr/",
            "is_draft": false,
            "costs": [],
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            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/index.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Conference",
            "start_date": "2018-02-08",
            "end_date": "2018-02-09",
            "venue": "",
            "city": "campus du Triolet, Université de Montpellier",
            "country": "",
            "geographical_range": "",
            "trainers": [],
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        },
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            "name": "LINUX - session 11 March 2025",
            "shortName": "",
            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands  (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2-2/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
                "http://edamontology.org/topic_3316"
            ],
            "keywords": [],
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            ],
            "openTo": "Everyone",
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            "organisedByTeams": [
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                    "name": "Genotoul-bioinfo",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api"
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            ],
            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2024-12-06T20:39:17.845500Z",
            "type": "Training course",
            "start_date": "2025-03-11",
            "end_date": "2025-03-11",
            "venue": "",
            "city": "castanet-tolosan",
            "country": "France",
            "geographical_range": "National",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2024-12-06",
            "registration_closing": "2025-03-04",
            "registration_status": "closed",
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        }
    ]
}