Handles creating, reading and updating events.

GET /api/event/?format=api&offset=20&ordering=-contacts
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 668,
    "next": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=40&ordering=-contacts",
    "previous": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&ordering=-contacts",
    "results": [
        {
            "id": 292,
            "name": "Introduction à R",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-10-17",
            "end_date": "2017-10-19",
            "venue": "",
            "city": "Villeurbanne",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 168,
            "name": "Metagenomic: amplicons and stats",
            "shortName": "",
            "description": "Familiarization with the hardware infrastructure, biological data banks and widely used bioinformatics softwares ...",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/metagenomic-amplicons-and-stats-2/",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/Sig_Genotoul_1_1_4.jpg",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2018-04-09",
            "end_date": "2018-04-12",
            "venue": "",
            "city": "Inra, 24 ch. de Borderouge, Auzeville",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 106,
            "name": "Formation \"Annotation & Analyse de Génomes Procaryotes - Mise en oeuvre de la Plateforme MicroScope\"",
            "shortName": "",
            "description": "Formations dédiées à l'analyse de génomes bactériens via l'utilisation de la plate-forme MicroScope.",
            "homepage": "https://www.genoscope.cns.fr/agc/microscope/training",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [
                {
                    "id": 9,
                    "name": "MicroScope",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/MicroScope/?format=api"
                }
            ],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/logolabgem.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-09-25",
            "end_date": "2017-09-29",
            "venue": "",
            "city": "Evry, France",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 120,
            "name": "Introduction au logiciel R ",
            "shortName": "",
            "description": "Acquérir les compétences nécessaires à l’utilisation du logiciel R, connaître les principales analyses statistiques ...",
            "homepage": "http://www.biosciencesco.fr/formation-continue/bio-informatique/formation-au-log…",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/logoPRABI_1.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-10-18",
            "end_date": "2017-10-20",
            "venue": "",
            "city": "Lyon",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 285,
            "name": "Metagenomic amplicon analysis/Frogs",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-02-19",
            "end_date": "2017-02-22",
            "venue": "",
            "city": "Salle de formation Inra",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 577,
            "name": "Annotation and analysis of prokaryotic genomes using the MicroScope platform - November 2024",
            "shortName": "MicroScope training - November 2024",
            "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.",
            "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_3301",
                "http://edamontology.org/topic_0797"
            ],
            "keywords": [
                "Sequence analysis",
                "Microbial evolution",
                "Structural and functional annotation of genomes",
                "Sequence annotation"
            ],
            "prerequisites": [
                "Licence"
            ],
            "openTo": "Everyone",
            "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/",
            "maxParticipants": 12,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [
                {
                    "id": 15,
                    "name": "Laboratory of Bioinformatics Analyses for Genomics and Metabolism",
                    "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Laboratory%20of%20Bioinformatics%20Analyses%20for%20Genomics%20and%20Metabolism/?format=api"
                }
            ],
            "organisedByOrganisations": [
                {
                    "id": 71,
                    "name": "University of Évry Val d'Essonne",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20of%20%C3%89vry%20Val%20d'Essonne/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 9,
                    "name": "MicroScope",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/MicroScope/?format=api"
                }
            ],
            "logo_url": "https://labgem.genoscope.cns.fr/wp-content/uploads/2021/06/GENOSCOPE-LABGeM.jpg",
            "updated_at": "2024-02-01T14:22:25.240457Z",
            "type": "Training course",
            "start_date": "2024-11-18",
            "end_date": "2024-11-22",
            "venue": "",
            "city": "Evry",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": "2024-10-18",
            "registration_status": "closed",
            "courseMode": "Onsite"
        },
        {
            "id": 264,
            "name": "Bioinformatique pour le traitement de données de séquençage (NGS)",
            "shortName": "",
            "description": "\nLes objectifs sont :\n- Savoir choisir les outils d'analyse\n- Etre autonome pour effectuer un pipeline d'analyse\n- Comprendre les principes des méthodes d'analyse\n- Savoir manipuler les fichiers de séquences : préparation et filtration\n- Etre capable d'évaluer la qualité des données\n- Savoir analyser avec ou sans génome de référence\nhttps://cnrsformation.cnrs.fr/\n\n",
            "homepage": "http://cnrsformation.cnrs.fr/stage-17010-Bioinformatique-pour-le-traitement-de-d…",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "Methodology",
                "NGS Data Analysis",
                "Analysis of RNAseq data",
                "Assembly of genomes and transcriptomes",
                "Read alignment on genomes",
                "Variant analysis",
                "Complete genomes",
                "Transcriptomics (RNA-seq)",
                "Genomics (DNA-seq)",
                "NGS Sequencing Data Analysis"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "S'acquitter des frais d'inscription, notions de base en informatique : fichiers, répertoire..., notions du système linux et des lignes de commandes, niveau master\n",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2019-03-24",
            "end_date": "2019-03-28",
            "venue": "",
            "city": "Montpellier",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 497,
            "name": "Linux Avancé / Advanced Linux - 2022 Session2",
            "shortName": "Advanced Linux - 2022 Session 2",
            "description": "Objectifs\r\n- Savoir utiliser des commandes linux pour traiter de grosses quantités de données : fichiers\r\nvolumineux et/ou en grands nombres : recherche, comptage, tri, fusion, …\r\nProgramme\r\n- Introduction\r\n- Décrire (wc, grep)\r\n- Manipuler des fichiers tabulés (cut, sort)\r\n- Rechercher (grep)\r\n- Redirection / Pipeline (stdin, stdout, stderr, >, 2>, &&, |)\r\n- Recherche avancée : notion d’expression régulière (egrep)\r\n- Rechercher/Remplacer haut débit (tr, sed)\r\n- Manipulation de fichier tabulé – mode avancé (awk)\r\n- Traitement séquentiel de nombreux fichiers (for)",
            "homepage": "https://abims.sb-roscoff.fr/training/courses",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [
                "http://edamontology.org/topic_3316"
            ],
            "keywords": [],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 18,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 65,
                    "name": "SBR - Roscoff Marine Station",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR%20-%20Roscoff%20Marine%20Station/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 4,
                    "name": "ABiMS",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api"
                }
            ],
            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2023-05-17T09:55:24.793130Z",
            "type": "Training course",
            "start_date": "2022-11-22",
            "end_date": "2022-11-22",
            "venue": "Station Biologique de Roscoff",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2022-10-07",
            "registration_closing": "2022-11-06",
            "registration_status": "closed",
            "courseMode": "Onsite"
        },
        {
            "id": 276,
            "name": "Linux et script pour la bioinformatique",
            "shortName": "",
            "description": "Pour la plupart des tâches communes, le système Linux (libre et gratuit) peut avantageusement remplacer les systèmes d'exploitation propriétaires tels que Windows ou MacOS. Les énormes avantages de Linux sont sa gratuité, son évolution constante et l'inexistence des virus. Ce stage est une initiation à l'utilisation du système d'exploitation Linux et des lignes de commande pour les non informaticiens, ainsi qu'une initiation à l'écriture et l'emploi de scripts (petits programmes) pour faciliter l'analyse de données. Il s'agit pour des débutants ou quasi débutants Linux d'utiliser le système et d'acquérir l'autonomie nécessaire pour résoudre les besoins communs simples d'analyse par la combinaison des méthodes à travers des scripts.\n \n",
            "homepage": "http://cnrsformation.cnrs.fr/stage-17285-Linux-et-script-pour-la-bioinformatique…",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "Linux"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "S'acquitter des frais d'inscription, notions de base en informatique : fichiers, répertoires, etc.\n",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2019-11-04",
            "end_date": "2019-11-06",
            "venue": "",
            "city": "Montpellier",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 209,
            "name": "Introduction to R Language",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2019-05-20",
            "end_date": null,
            "venue": "",
            "city": "CBiB",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 251,
            "name": "Initiation à R",
            "shortName": "",
            "description": "\nObjectifs\n\n- Présenter le langage de programmation R et ses principes.\n- Utiliser les principales fonctionnalités de ce langage pour effectuer des calculs mathématiques, statistiques ou des représentations graphiques.\n- Attention : ce module n'est ni un module de statistique, ni un module d'analyse statistique des données.\n\nProgramme\n\n- Structures et manipulation de données.\n- Principaux éléments du langage de programmation (boucle, fonctions…).\n- Différentes représentations graphiques de données/résultats (plot, histogramme, boxplot).\n",
            "homepage": "http://migale.jouy.inra.fr/",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "Programming Languages & Computer Sciences",
                "R Language"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-03-06",
            "end_date": null,
            "venue": "",
            "city": "Jouy en Josas",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 119,
            "name": "Introduction à R",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-10-17",
            "end_date": "2017-10-19",
            "venue": "",
            "city": "Villeurbanne",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 253,
            "name": "Python avancé",
            "shortName": "",
            "description": "\nObjectifs\n\nEtre autonome pour des manipulations simples visant à extraire, reformater des données issues de fichiers texte.\n \n\n \n \n \n \nProgramme\n\n- Expressions régulières\n- Gestion des erreurs\n- Biopython\n- Réalisation de programmes simples\n",
            "homepage": "http://migale.jouy.inra.fr/",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "Programming Languages & Computer Sciences",
                "Python Language"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-03-09",
            "end_date": null,
            "venue": "",
            "city": "jouy en josas",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 384,
            "name": "Introduction to High-performance computing",
            "shortName": "",
            "description": "This course offers an introduction on how to work with HPC Southgreen clusters. It is intended for new users, with the goals of improving user productivity and minimizing the obstacles. The HPC Southgreen cluster are presented, together with the tools to be able to use it. Module load notion, interactive usage and batch jobs submittions will be developped.\nPrerequisites\nLinux Basics\n\nProgram\nIntroduction to HPCs architecture\nDiscover Sun grid Engine (SGE)\nData Management on clusters\nInteractive Usage\nSubmit batch jobs\n\n\nLearning objectives\nAfter this course, participants should be able to:\nUse the HPC resources interactively\nManage data copies\nUse module load\nsubmit batch jobs\n\n\nInstructors\n\n\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat(BP) - bertrand.pitollat@cirad.fr\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr​\n\n",
            "homepage": "https://southgreenplatform.github.io/trainings//HPC/",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [
                {
                    "id": 24,
                    "name": "South Green",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api"
                }
            ],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2018-03-14",
            "end_date": null,
            "venue": "",
            "city": "Centre IRD, Montpellier",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 756,
            "name": "SHORT-READ ALIGNMENT AND SMALL SIZE VARIANTS CALLING - 13 avril 2026",
            "shortName": "",
            "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
                "http://edamontology.org/topic_0102",
                "http://edamontology.org/topic_2885"
            ],
            "keywords": [],
            "prerequisites": [
                "Linux/Unix",
                "Cluster"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 12,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 37,
                    "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 22,
                    "name": "Genotoul-bioinfo",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api"
                }
            ],
            "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png",
            "updated_at": "2026-02-02T09:47:33.747044Z",
            "type": "Training course",
            "start_date": "2026-04-13",
            "end_date": "2026-04-14",
            "venue": "",
            "city": "Castanet-Tolosan",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2026-01-14",
            "registration_closing": "2026-02-27",
            "registration_status": "closed",
            "courseMode": "Onsite"
        },
        {
            "id": 20,
            "name": "How to use South Green HPC (IRD cluster)?",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-02-07",
            "end_date": null,
            "venue": "",
            "city": "Centre IRD Montpellier",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 339,
            "name": "Python avance",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-02-28",
            "end_date": null,
            "venue": "",
            "city": "Jouy en Josas",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 268,
            "name": "Rôles multiples de l’ARN",
            "shortName": "",
            "description": "Ce cours théorique et pratique de deux semaines est orienté sur les méthodes pour étudier la synthèse, maturation et la dégradation d’une large variété de molécules d’ARN dans les cellules eucaryotes - voir plus\n",
            "homepage": "https://www.pasteur.fr/fr/enseignement/programmes-doctoraux-et-cours/cours-paste…",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "Analysis of RNAseq data",
                "Transcriptomics (RNA-seq)",
                "NGS Sequencing Data Analysis"
            ],
            "prerequisites": [
                "Master"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "Les candidats doivent avoir de bonnes connaissances en génétique, biologie moléculaire et biochimie du niveau de la fin de première année de Master, ainsi qu’un niveau minimum (B1) en français ET en anglais. Les candidatures sont sélectionnées et évaluées par le Comité du cours.\n",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2019-02-10",
            "end_date": "2019-02-21",
            "venue": "",
            "city": "institut Pasteur",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        },
        {
            "id": 518,
            "name": "Statistiques avec R / Statistics with R - Session 1 - 2023",
            "shortName": "R - Stats 2023 S1",
            "description": "Objectifs\r\n- Choisir un test statistique adapté à un problème donné.\r\n-\r\nImporter des données et réaliser un test avec R.\r\nProgramme\r\n- Théorie : modèle, loi de distribution, hypothèse H0, variable de test, p-value, tests multiples, FDR\r\n- Pratique : réalisation de tests sous R dans un environnement convivial (RStudio)\r\n-\r\ntests usuels simples : Gauss, Student, χ2\r\n-\r\ntests multiples : ANOVA, correction (ex. Student multiple), tests spécifiques (ex. SAM)",
            "homepage": "https://abims.sb-roscoff.fr/training/courses",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [
                "http://edamontology.org/topic_2269"
            ],
            "keywords": [],
            "prerequisites": [
                "Basic knowledge of R"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 18,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [
                {
                    "id": 4,
                    "name": "ABiMS",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api"
                }
            ],
            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2023-05-17T09:27:31.911754Z",
            "type": "Training course",
            "start_date": "2023-06-01",
            "end_date": "2023-06-01",
            "venue": "",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": "2023-02-22",
            "registration_closing": "2023-04-30",
            "registration_status": "closed",
            "courseMode": "Onsite"
        },
        {
            "id": 27,
            "name": "Rrr - Rapide IntRoduction à R (R pour la génomique)",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png",
            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2017-03-05",
            "end_date": "2017-06-01",
            "venue": "",
            "city": "ICM",
            "country": "",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "past",
            "registration_opening": null,
            "registration_closing": null,
            "registration_status": "unknown",
            "courseMode": null
        }
    ]
}