Event List
Handles creating, reading and updating events.
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La formation abordera les différents points fondamentaux (théoriques, pratiques, juridiques) en lien avec la politique nationale d’ouverture des données de la recherche et présentera sous forme de séances pratiques les ressources nationales accessibles à la communauté scientifique ainsi que les solutions proposées par l’IFB pour gérer les données d’un projet de recherche.", "homepage": "https://www.france-bioinformatique.fr/formation/fair-data-science-ouverte-et-pgd-session-2/", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0219", "http://edamontology.org/topic_3571", "http://edamontology.org/topic_3420" ], "keywords": [ "Données" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "public", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": null, "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2021-11-15", "end_date": "2021-11-18", "venue": "Online zoom session", "city": "", "country": "France", "geographical_range": "National", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/162/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/655/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/198/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2021-09-27", "registration_closing": "2021-10-27", "registration_status": "closed", "courseMode": "Online" }, { "id": 507, "name": "Annotation and analysis of prokaryotic genomes using the MicroScope platform - November 2023", "shortName": "MicroScope training - November 2023", "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.", "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0797", "http://edamontology.org/topic_0085", "http://edamontology.org/topic_3301" ], "keywords": [ "Sequence analysis", "Microbial evolution", "Structural and functional annotation of genomes", "Sequence annotation" ], "prerequisites": [ "Licence" ], "openTo": "Everyone", "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. 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Chaque module comprend des présentations générales et des séances pratiques sur ordinateur, avec Galaxy.\r\nLes objectifs du module 2 sont :\r\n- Comprendre les grands principes de la détection de variants\r\n- Réaliser les différentes étapes du post-traitement des données d’alignement à la détection de variants\r\n- Adapter l’analyse en fonction du type de données NGS générées\r\n- Comprendre la structure des données de variants\r\n- Savoir annoter des variants\r\n- Etre capable d’interpréter une liste de variants grâce aux outils libres disponibles", "homepage": "https://bilille.univ-lille.fr/training/training-offer", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Internal personnel", "accessConditions": "- Etre familier avec la plate-forme web Galaxy (idéalement avoir suivi la formation bilille « Initiation à Galaxy »)\r\n- Avoir suivi le module 1/5 « Analyses ADN » de ce cycle ou toute autre formation permettant de justifier de connaissances sur les données de séquençage haut débit et leur alignement", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/487/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 66, "name": "UDL", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/UDL/?format=api" } ], "organisedByTeams": [ { "id": 3, "name": "Bilille", "url": "https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=api" } ], "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png", "updated_at": "2024-12-09T17:36:14.949400Z", "type": "Training course", "start_date": "2021-03-24", "end_date": "2021-03-26", "venue": "", "city": "Lille", "country": "FRANCE", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2021-01-06", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 233, "name": "Les journées de l'IFB 2019", "shortName": "", "description": "l'IFB propose 2 jours, ouverts à tous, pour faire le point sur ses services et son rôle au sein du réseau européen ELIXIR", "homepage": "https://ifb-ag.sciencesconf.org", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Mandatory", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://www.france-bioinformatique.fr/wp-content/uploads/logo-ifb-couleur.svg", "updated_at": "2023-08-22T14:06:02.684030Z", "type": "Meeting", "start_date": "2019-11-27", "end_date": null, "venue": "", "city": "Fondation Victor Lyon, Cité Internationale Universitaire de Paris", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Online" }, { "id": 485, "name": "IMGT® standards, databases, tools and web resources - 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At the end of the training, participants should be able to write simple python programs to handle biological data and to understand more complex programs written by others.\r\nNote : This course in currently available only in french", "homepage": "https://southgreenplatform.github.io/trainings//python/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Internal personnel", "accessConditions": "Open to South Green close collaborators", "maxParticipants": 17, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T15:38:04.906796Z", "type": "Training course", "start_date": "2023-04-17", "end_date": "2023-04-20", "venue": "", "city": "Montpellier", "country": "France", "geographical_range": "Local", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/771/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/772/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/773/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/519/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 376, "name": "Formation au logiciel R", "shortName": "", "description": "", "homepage": "https://www.biosciencesco.fr/formations/bio-informatique/formation-au-logiciel-r…", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/PRABI.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-10-08", "end_date": "2018-10-10", "venue": "", "city": "Lyon", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 226, "name": "Intiation aux analyses de données NGS - 1", "shortName": "", "description": "Une formation offrant des connaissances pluridisciplinaires dans le domaine de la bioinformatique...", "homepage": "https://sns.edu.umontpellier.fr/fr/master-sciences-numerique-pour-la-sante-montp…", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 11, "name": "Parcours BCD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Parcours%20BCD/?format=api" }, { "id": 54, "name": "UM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/UM/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/Logo_BCD-1-300x300.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2019-10-21", "end_date": null, "venue": "", "city": "Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 500, "name": "Initiation à Galaxy / Galaxy Initiation - 2022 Session 2", "shortName": "Galaxy Initiation - 2022 Session 2", "description": "Objectifs\r\n- Savoir exploiter l’environnement Galaxy pour être en mesure d’analyser ses données.\r\n- Être en mesure de créer ses workflows.\r\nProgramme\r\n- Téléchargement des données à traiter.\r\n- Manipulation de fichiers.\r\n- Traitement des données.\r\n- Visualisation des résultats.\r\n- Création de workflows.\r\n- Partage de résultats et de workflows.", "homepage": "https://abims.sb-roscoff.fr/training/courses", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0769" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2023-05-17T09:54:49.847679Z", "type": "Training course", "start_date": "2022-11-24", "end_date": "2022-11-24", "venue": "Station Biologique de Roscoff", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-10-07", "registration_closing": "2022-11-06", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 13, "name": "Cycle « Initiation à la bioinformatique » - Module 2/4 : Alignement de séquences", "shortName": "", "description": "Formation \"Alignement de séquences\"", "homepage": "https://wikis.univ-lille1.fr/bilille/formation", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/logo_bilille_complet_120_120_2.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2016-11-24", "end_date": "2016-11-25", "venue": "", "city": "Université de Lille", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 515, "name": "Cycle « Analyse de données de séquençage à haut-débit » - Module Analyses ADN (sous Galaxy) - Session Mars 2023", "shortName": "", "description": "Bilille, la plateforme de bioinformatique, biostatistique et bioanalyse de la métropole lilloise, propose chaque année un cycle de formation d'introduction à l'analyse des données de séquençage à haut débit.\r\nCe cycle est composé des modules suivants, à la carte : \r\n- Analyses ADN\r\n- Analyses de variants\r\n- Métagénomique\r\n- Analyses ChIP-seq\r\n- Analyses RNA-seq\r\nLes fiches descriptives sont accessibles sur le site de bilille. Chaque module comprend des présentations générales et des séances pratiques sur ordinateur, avec Galaxy.\r\n\r\nLes objectifs du module Analyses ADN sont :\r\n- Apprendre à manipuler des données de séquençage d’ADN\r\n- Réaliser des contrôles de qualité et du nettoyage des lectures\r\n- Présenter les méthodes et outils d'alignement\r\n- Réaliser des contrôles de qualité et des alignements sur une référence\r\n- Introduction à l’assemblage des lectures sans référence\r\n- Utiliser la plateforme Galaxy pour ces analyses", "homepage": "https://bilille.univ-lille.fr/training/training-offer", "is_draft": false, "costs": [ "Free to academics" ], "topics": [], "keywords": [ "NGS Data Analysis", "Assembly of genomes and transcriptomes", "Read alignment on genomes", "NGS Sequencing Data Analysis" ], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Everyone", "accessConditions": "Le cycle de formation \"Analyse de données de séquençage à haut-débit\" organisé par bilille est financé par les services formation des personnels de l'Université de Lille, CNRS et Inserm, et est ouvert en priorité aux personnels de la région des Hauts-de-France de ces organismes.", "maxParticipants": 14, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/763/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/487/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 66, "name": "UDL", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/UDL/?format=api" } ], "organisedByTeams": [ { "id": 3, "name": "Bilille", "url": "https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=api" } ], "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png", "updated_at": "2024-12-09T17:37:52.573465Z", "type": "Training course", "start_date": "2023-03-08", "end_date": "2023-03-09", "venue": "", "city": "Lille", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-11-14", "registration_closing": "2023-02-28", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 566, "name": "Metabarcoding analyses 2022", "shortName": "", "description": "This course offers an introduction to metabarcoding analyses at two different levels/steps: bioinformatics with FROGS pipeline in the Galaxy environment, biostatistics with PhyloSeq R package. This includes preprocessing, clustering and OTU picking, taxonomic assignation, estimation of diversity, visualization of statistics results.\r\nPrerequisites\r\nGalaxy, R knowledge\r\n\r\nProgram\r\nIntroduction to metagenomics and metabarcoding\r\nPre-processing, Clustering, taxonomic affiliation (FROGS)\r\nHandling and visualizing OTU table using PhyloSeq R package (PhyloSeq)\r\n\r\n\r\nLearning objectives\r\nManipulate tools available for metabarcoding analysis\r\nStudy sample diversity by using NGS and post-NGS analysis tools\r\nVisualize diversity metrics in metabarcoding approach\r\n\r\n\r\nInstructors\r\nJulie Orjuela - julie.orjuela@ird.fr\r\nFlorentin Constancias - florentin.constancias@cirad.fr\r\nAlexis Dereeper - alexis.dereeper@ird.fr", "homepage": "https://southgreenplatform.github.io/trainings//metabarcoding/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Open to South Green close collaborators", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T15:31:47.907535Z", "type": "Training course", "start_date": "2022-06-27", "end_date": "2022-06-28", "venue": "", "city": "montpellier", "country": "france", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Onsite" }, { "id": 91, "name": "Analyse avancée de séquences sur mesure", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-06-25", "end_date": "2017-06-26", "venue": "", "city": "BIOMNIS, Lyon", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 251, "name": "Initiation à R", "shortName": "", "description": "\nObjectifs\n\n- Présenter le langage de programmation R et ses principes.\n- Utiliser les principales fonctionnalités de ce langage pour effectuer des calculs mathématiques, statistiques ou des représentations graphiques.\n- Attention : ce module n'est ni un module de statistique, ni un module d'analyse statistique des données.\n\nProgramme\n\n- Structures et manipulation de données.\n- Principaux éléments du langage de programmation (boucle, fonctions…).\n- Différentes représentations graphiques de données/résultats (plot, histogramme, boxplot).\n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Programming Languages & Computer Sciences", "R Language" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-03-06", "end_date": null, "venue": "", "city": "Jouy en Josas", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null } ] }
