Handles creating, reading and updating events.

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            "name": "EBAII : Ecole de Bioinformatique \"Traitement des données de génomique obtenues par séquençage à haut débit\"  niveau intermédiaire - session 2025",
            "shortName": "EBAII N2 session juin 2025",
            "description": "Objectifs\r\nLa formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour de trois ateliers thématiques en session parallèle (bulk RNA-seq, ChIP-seq, variants génomiques/GWAS), et abordera la visualisation et l’intégration des données. L’école vise à approfondir les concepts, à manipuler des outils informatiques avancés et à en interpréter les résultats.\r\nElle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données.\r\nAttention : le tutorat n'a pas pour vocation de réaliser l’analyse complète des données des participants.",
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            "updated_at": "2025-01-09T13:06:41.575826Z",
            "type": "Training course",
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            "name": "Modélisation in silico de structures 3D de protéines. Prédiction de mutations, de fixation de ligands  : 2025",
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            "description": "Objectifs pédagogiques\r\nA l’issue de la formation, les stagiaires connaîtront les principales fonctionnalités du logiciel PyMOL. Ils seront capables de les appliquer pour visualiser leur système biologique d’intérêt, et d’effectuer des commandes basiques d’identification de poches catalytiques, de profilage de surface électrostatique, et de mutations d’acides aminés.\r\n\r\nAussi, ils connaîtront les bases et les outils de bioinformatique structurale et seront autonomes pour effectuer des modèles de protéines par prédiction (Alphafold2), calculer les meilleures poses de fixation de leur(s) ligand(s) (Autodock4) et reconstruire l’éventuel assemblage biologique.\r\n\r\nBonus : Ils s’approprieront ces outils avec une demi-journée dédiée à la modélisation de leur système d’étude : protéines, interactions protéines/ADN, arrimage de ligand, etc.\r\n\r\nProgramme\r\nVisualiser :\r\n* Maîtriser les bases de la visualisation des protéines en 3D avec PyMOL.\r\nComprendre :\r\n* Analyser des structures 3D de protéines (RX ou RMN).\r\n* Identifier des homologues avec HHpred.\r\n* Modéliser par prédiction sa protéine d’intérêt avec Alphafold2.\r\nPrédire :\r\n* Savoir calculer des meilleures poses de ligands avec Autodock.\r\n* Prédir et modéliser les mutations in silico.\r\n\r\n- Points forts et limites des différents outils\r\n- ️“hand- on tutorials”\r\n- Plus une session dédiée : «bring your own protein»",
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            "updated_at": "2025-01-23T15:44:32.386212Z",
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            "name": "Analyses Single Cell RNA-seq (ScRNA-seq) avec R",
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            "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png",
            "updated_at": "2024-12-04T10:38:18.342890Z",
            "type": "Training course",
            "start_date": "2025-06-03",
            "end_date": "2025-06-04",
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            "city": "Bordeaux",
            "country": "France",
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            "id": 643,
            "name": "Artificial Intelligence and Machine Learning in Life Sciences: from foundations to applications 2025",
            "shortName": "AI & ML in LS 2025",
            "description": "Artificial intelligence (AI) has permeated our lives, transforming how we live and work. Over the past few years, a rapid and disruptive acceleration of progress in AI has occurred, driven by significant advances in widespread data availability, computing power and machine learning. Remarkable strides were made in particular in the development of foundation models - AI models trained on extensive volumes of unlabelled data. Moreover, given the large amounts of omics data that are being generated and made accessible to researchers due to the drop in the cost of high-throughput technologies, analysing these complex high-volume data is not trivial, and the use of classical statistics can not explore their full potential. As such, Machine Learning (ML) and Artificial Intelligence (AI) have been recognized as key opportunity areas, as evidenced by a number of ongoing activities and efforts throughout the community.\r\n\r\nHowever, beyond the technological advances, it is equally important that the individual researchers acquire the necessary knowledge and skills to fully take advantage of Machine Learning. Being aware of the challenges, opportunities and constraints that ML applications entail, is a critical aspect in ensuring high quality research in life sciences.\r\n\r\nRecognizing this need, this week-long training will bring together experts from four ELIXIR Nodes and deliver a hands-on, high-intensity course available for members from all ELIXIR Nodes.\r\n\r\nLearners will be guided across the various steps in Machine Learning, from the foundational concepts, through the deep learning and generative AI techniques, closely complemented by insights into the existing reporting (DOME Recommendations) and regulatory frameworks (EU AI Act).\r\n\r\nThis 4-day school will involve around 10 trainers/helpers from across 4 different ELIXIR nodes and 30 participants from across all ELIXIR nodes. It will be hosted in France in May 2025.",
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                "Machine Learning basics",
                "Data analysis"
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            "logo_url": "https://www.dissco.eu/wp-content/uploads/Elixir-Europe-logo-1-300x226.png",
            "updated_at": "2024-12-19T15:43:33.918124Z",
            "type": "Training course",
            "start_date": "2025-05-19",
            "end_date": "2025-05-23",
            "venue": "CAES Centre Paul-Langevin",
            "city": "Aussois",
            "country": "France",
            "geographical_range": "International",
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            "id": 716,
            "name": "Manipulating  & Visualizing Data with R",
            "shortName": "R - DataViz",
            "description": "Objectifs\r\n- Importer, structurer, transformer et exporter un tableau de données avec R\r\n- Générer des figures de qualité pour, par exemple, une publication scientifique\r\n\r\nProgramme\r\n- Introduction au tidyverse (metapackage pour manipuler, visualiser et analyser des données)\r\n- Import et export de tableaux de données (csv, excel, google sheet, etc.)\r\n- Manipulation de tableaux de données avec dplyr et tidyr (filtre, aggregation, jointure)\r\n- Manipulation de chaînes de caractères et de dates avec stringr et lubridate\r\n- Introduction aux concepts de visualisation de données\r\n- Apprendre à utiliser ggplot2 grâce à esquisse\r\n- Partager ses résultats avec Quarto",
            "homepage": "https://abims.sb-roscoff.fr/ateliers/2025",
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                "http://edamontology.org/topic_0092"
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            "openTo": "Everyone",
            "accessConditions": "Preregistration required using: https://abims.sb-roscoff.fr/ateliers/preinscription",
            "maxParticipants": 18,
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            "updated_at": "2025-02-21T08:52:06.958401Z",
            "type": "Training course",
            "start_date": "2025-05-20",
            "end_date": "2025-05-20",
            "venue": "",
            "city": "Roscoff",
            "country": "France",
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            "id": 696,
            "name": "Annotation et comparaison de génomes bactériens : 2025",
            "shortName": "Annotation et comparaison de génomes bactériens",
            "description": "Objectifs pédagogiques\r\nConnaître les concepts et les principales méthodes bioinformatiques pour comparer un jeu de données de génomes microbiens. Construire et évaluer la qualité d’un jeu de données. Savoir mettre en œuvre une comparaison de génomes et en interpréter les résultats.\r\n\r\nProgramme\r\n* Construction d’un jeu de données :\r\n* Téléchargement de données publiques\r\n* Evaluation de la qualité\r\n* Caractérisation de la diversité génomique\r\n* Stratégies de comparaison :\r\n* Construction de famille de protéines\r\n* Alignement de génomes complets\r\n* Analyse des résultats :\r\n   o Notion de core et pan-génome\r\n   o Notions élémentaires de phylogénomique\r\n   o Visualisation et interprétation des résultats\r\n* Mise en pratique sur un jeu de données bactériens, utilisation des logiciels dRep et Roary sous Galaxy.",
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            "topics": [
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            "updated_at": "2025-01-29T11:32:53.505947Z",
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            "end_date": "2025-05-20",
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            "city": "Jouy-en-Josas",
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        {
            "id": 715,
            "name": "Initiation à R / R Initiation",
            "shortName": "R - Init",
            "description": "Objectifs\r\n- Pour une personne qui découvre R : savoir utiliser R de manière autonome et comprendre les principes de\r\nbase\r\n- Être capable de suivre le module Manipulation et visualisation de données avec R\r\n\r\nProgramme\r\n- Introduction à l'IDE Rstudio\r\n- Créer un projet et un script\r\n- Manipulation de données de base\r\n- Structures de données : qu'est-ce qu'une variable, un type, un objet ?\r\n- Utiliser des fonctions de packages externes",
            "homepage": "https://abims.sb-roscoff.fr/ateliers/2025",
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            "costs": [
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                "http://edamontology.org/topic_2269"
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            "accessConditions": "Preregistration required using: https://abims.sb-roscoff.fr/ateliers/preinscription",
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            "updated_at": "2025-02-21T08:52:21.853835Z",
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        {
            "id": 704,
            "name": "Mathematical and Computational Evolutionary Biology (MCEB)",
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            "description": "MCEB will take place in Granada, Spain for its 2025 edition. The meeting will put the emphasis on methods and models for phylogenomics and population genomics. Beyond this year's themes, general concepts, models, methods and algorithms will be presented and discussed, just as in the previous editions of MCEB. As usual, the meeting will bring together researchers originating from various disciplines: mathematics, statistics, computer science, phylogenetics, population genetics, molecular epidemiology, biodiversity and macroevolution... Keynote speakers will\r\nintroduce a field of research and discuss their own work in this field. Afternoon will be for short presentations and posters, with plenty of time for discussions. We will stop early every day, thus leaving time for other activities.\r\n\r\nKEYNOTES:\r\n** Sophie Abby - \"Evolution of biosynthetic pathways in Bacteria\"\r\n** Richard Durbin - \"Population genome variation – going beyond SNPs\"\r\n** Lisa Pokorny Montero - \"Genomic approaches to the study of plant evolution\"\r\n** Harald Ringbauer - \"Advanced ancient DNA analysis\"\r\n** Kristina Wicke - \"Inference of phylogenetic networks\"\r\n** Jaime Huerta-Cepas - \"Evolutionary significance of unknown microbial genes\"",
            "homepage": "https://mceb2025.sciencesconf.org/",
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                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_3050",
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                "Biodiversity",
                "Evolution and Phylogeny",
                "Phylogenetics"
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            "updated_at": "2025-02-17T08:51:35.482439Z",
            "type": "Meeting",
            "start_date": "2025-05-12",
            "end_date": "2025-05-16",
            "venue": "Carmen de la Victoria\" and \"Corrala de Santiago\"",
            "city": "Granada",
            "country": "Spain",
            "geographical_range": "International",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2025-02-01",
            "registration_closing": "2025-05-05",
            "registration_status": "open",
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        },
        {
            "id": 649,
            "name": "Analyses NGS avec R",
            "shortName": "",
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            "homepage": "https://cnrsformation.cnrs.fr/analyses-ngs-r?axe=176",
            "is_draft": false,
            "costs": [],
            "topics": [
                "http://edamontology.org/topic_0605"
            ],
            "keywords": [
                "NGS Data Analysis",
                "R Language",
                "Gene expression differential analysis",
                "Data visualization"
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            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
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                }
            ],
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            ],
            "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png",
            "updated_at": "2024-12-04T10:38:10.103074Z",
            "type": "Training course",
            "start_date": "2025-05-15",
            "end_date": "2025-05-16",
            "venue": "",
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            "registration_opening": "2024-12-03",
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            "homepage": "https://abims.sb-roscoff.fr/ateliers/2025",
            "is_draft": false,
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                "Free"
            ],
            "topics": [
                "http://edamontology.org/topic_3316"
            ],
            "keywords": [],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "Preregistration required using: https://abims.sb-roscoff.fr/ateliers/preinscription",
            "maxParticipants": 18,
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            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2025-02-21T08:52:30.567397Z",
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            "start_date": "2025-05-16",
            "end_date": "2025-05-16",
            "venue": "",
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            "geographical_range": "",
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            "homepage": "https://abims.sb-roscoff.fr/ateliers/2025",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [
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            ],
            "keywords": [],
            "prerequisites": [
                "Linux - Basic Knowledge"
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            "openTo": "Everyone",
            "accessConditions": "Preregistration required using: https://abims.sb-roscoff.fr/ateliers/preinscription",
            "maxParticipants": 18,
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            ],
            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2025-02-21T08:52:39.134624Z",
            "type": "Training course",
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            "end_date": "2025-05-15",
            "venue": "",
            "city": "Roscoff",
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            "trainers": [],
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            "registration_closing": "2025-04-30",
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            "name": "Langage R : introduction",
            "shortName": "",
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            "homepage": "https://cnrsformation.cnrs.fr/langage-r-introduction?axe=176",
            "is_draft": false,
            "costs": [],
            "topics": [
                "http://edamontology.org/topic_0605"
            ],
            "keywords": [
                "R Language"
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            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 12,
            "contacts": [
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            ],
            "elixirPlatforms": [],
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                    "id": 6,
                    "name": "CNRS formation entreprise",
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                }
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                    "id": 6,
                    "name": "CBiB",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/CBiB/?format=api"
                }
            ],
            "logo_url": "https://services.cbib.u-bordeaux.fr/utils/logo_cbib.png",
            "updated_at": "2024-12-04T10:27:27.814903Z",
            "type": "Training course",
            "start_date": "2025-05-12",
            "end_date": "2025-05-14",
            "venue": "",
            "city": "Bordeaux",
            "country": "France",
            "geographical_range": "National",
            "trainers": [],
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            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2024-12-03",
            "registration_closing": "2025-05-12",
            "registration_status": "open",
            "courseMode": "Onsite"
        },
        {
            "id": 712,
            "name": "Linux - Initiation / Linux for Beginners",
            "shortName": "Linux Initiation",
            "description": "Objectifs :\r\n- Être capable de se connecter à une machine Linux\r\n- Être capable de transférer des fichiers à partir de/vers une machine Linux\r\n- Être capable de naviguer dans le système de fichiers\r\n- Être capable d’examiner le contenu d’un fichier et de gérer l’espace disque\r\n- Être capable de gérer les droits d’accès aux répertoires et aux fichiers.\r\n- Être capable de gérer le lancement, l’interruption et l’arrêt de processus",
            "homepage": "https://abims.sb-roscoff.fr/ateliers/2025",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [
                "http://edamontology.org/topic_3316"
            ],
            "keywords": [
                "Linux",
                "Operating systems"
            ],
            "prerequisites": [],
            "openTo": "Everyone",
            "accessConditions": "Preregistration required using: https://abims.sb-roscoff.fr/ateliers/preinscription",
            "maxParticipants": 16,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 65,
                    "name": "SBR",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/SBR/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 4,
                    "name": "ABiMS",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api"
                }
            ],
            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2025-02-21T08:52:59.581686Z",
            "type": "Training course",
            "start_date": "2025-05-14",
            "end_date": "2025-05-14",
            "venue": "",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2025-02-09",
            "registration_closing": "2025-04-30",
            "registration_status": "open",
            "courseMode": "Onsite"
        },
        {
            "id": 695,
            "name": "Analyse statistique de données RNA-Seq - Recherche des régions d’intérêt différentiellement exprimées : 2025",
            "shortName": "Analyse statistique de données RNA-Seq",
            "description": "Objectifs pédagogiques\r\n* Se sensibiliser aux concepts et méthodes statistiques pour l’analyse de données transcriptomiques de type RNA-Seq.\r\n* Comprendre le matériel et méthodes (normalisation et tests statistiques) d’un article.\r\n* Réaliser une étude transcriptomique avec R dans l’environnement RStudio.\r\n\r\nProgramme\r\n* Planification expérimentale des expériences RNA-Seq (identification des biais, répétitions, biais contrôlables).\r\n* Normalisation et analyse différentielle : recherche de “régions d’intérêt” différentiellement exprimées (modèle linéaire généralisé).\r\n*Prise en compte de la multiplicité des tests.\r\n\r\nLe cours sera illustré par différents exemples. Un jeu de données à deux facteurs sera analysé avec les packages R DESeq2 et edgeR dans l’environnement RStudio.",
            "homepage": "https://documents.migale.inrae.fr/trainings.html",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [
                "http://edamontology.org/topic_3170",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_3308"
            ],
            "keywords": [
                "Statistical differential analysis",
                "RNA-seq"
            ],
            "prerequisites": [
                "Basic knowledge of R"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 10,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api"
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            "elixirPlatforms": [],
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            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 82,
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                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api"
                },
                {
                    "id": 88,
                    "name": "BioinfOmics",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 10,
                    "name": "MIGALE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api"
                }
            ],
            "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png",
            "updated_at": "2025-01-23T15:39:41.484105Z",
            "type": "Training course",
            "start_date": "2025-05-12",
            "end_date": "2025-05-13",
            "venue": "",
            "city": "Jouy-en-Josas",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2025-01-21",
            "registration_closing": "2025-04-27",
            "registration_status": "open",
            "courseMode": "Online"
        },
        {
            "id": 710,
            "name": "Principes FAIR  & Git Initiation",
            "shortName": "FAIR & GIT - Initiation",
            "description": "Objectifs\r\n- Principes FAIR :\r\n    Connaître les principes FAIR\r\n    Être capable de prendre en compte les principes FAIR dans l'ensemble des étapes d'un projet impliquant la \r\n    collecte et/ou l'analyse de données\r\n- Initiation à Git :\r\n    Savoir définir ce qu’est un outil de gestion de version\r\n    Être capable d’initialiser un entrepôt Git pour un projet\r\n    Être capable de définir quels fichiers inclure/exclure d’un projet\r\n    Savoir enregistrer localement une nouvelle version pour un projet\r\n    Savoir partager des modifications locales avec tous les contributeurs d’un projet\r\n    Savoir gérer des modifications en parallèle en utilisant les branches\r\n   Connaître les bonnes pratiques pour contribuer à projet tiers\r\n\r\nProgramme : \r\n- Principes FAIR\r\n    Présentation des principes FAIR\r\n    Exemples de bonnes pratiques dans la gestion des données : description, organisation du stockage, \r\n    traitements et analyses, mise en accès\r\n- Initiation à Git\r\n    Présentation des avantages de la gestion de versions (projets individuels & projets collaboratifs)\r\n    Présentation des principes de fonctionnement de Git\r\n    Présentation et mise en œuvre des commandes principales de Git (clone, checkout, add, rm, commit, merge,\r\n    push, pull) ; en ligne de commande ou en utilisant une interface graphique (GitHub et GitLab)",
            "homepage": "https://abims.sb-roscoff.fr/ateliers/2025",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [
                "none"
            ],
            "openTo": "Everyone",
            "accessConditions": "Pre-registration required using https://abims.sb-roscoff.fr/ateliers/preinscription",
            "maxParticipants": 18,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/821/?format=api"
            ],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [
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                    "id": 65,
                    "name": "SBR",
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            ],
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                    "name": "ABiMS",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api"
                }
            ],
            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2025-02-21T08:53:21.142266Z",
            "type": "Training course",
            "start_date": "2025-05-13",
            "end_date": "2025-05-13",
            "venue": "",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "",
            "trainers": [],
            "trainingMaterials": [],
            "computingFacilities": [],
            "realisation_status": "future",
            "registration_opening": "2025-02-09",
            "registration_closing": "2025-04-30",
            "registration_status": "open",
            "courseMode": "Onsite"
        },
        {
            "id": 711,
            "name": "Initiation à Galaxy / Galaxy Initiation",
            "shortName": "Galaxy Initiation",
            "description": "Objectifs\r\n- Savoir exploiter l’environnement Galaxy pour être en mesure d’analyser ses données.\r\n- Être en mesure de créer ses workflows.\r\nProgramme\r\n- Téléchargement des données à traiter.\r\n- Manipulation de fichiers.\r\n- Traitement des données.\r\n- Visualisation des résultats.\r\n- Création de workflows.\r\n- Partage de résultats et de workflows.",
            "homepage": "https://abims.sb-roscoff.fr/ateliers/2025",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [
                "http://edamontology.org/topic_0769"
            ],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Everyone",
            "accessConditions": "Preregistration required using: https://abims.sb-roscoff.fr/ateliers/preinscription",
            "maxParticipants": 18,
            "contacts": [],
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            "organisedByTeams": [
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                    "id": 4,
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                    "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api"
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            ],
            "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png",
            "updated_at": "2025-02-21T08:53:09.273663Z",
            "type": "Training course",
            "start_date": "2025-05-12",
            "end_date": "2025-05-12",
            "venue": "",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "",
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            "computingFacilities": [],
            "realisation_status": "future",
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            "registration_closing": "2025-04-30",
            "registration_status": "open",
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        },
        {
            "id": 670,
            "name": "Analysis of shotgun metagenomic data - May 2025",
            "shortName": "",
            "description": "This training session is organized by the Genotoul bioinfo platform. This course is dedicated to the analysis of prokaryotic shotgun metagenomic data from Illumina and Pacbio HiFi sequencing technology. \r\n\r\nAfter an overview of metagenomics and the biases and limitations of analyses, we will look at the main steps involved in analysing metagenomic data and launch independent tools on the genobioinfo cluster.\r\nLearners will then test a workflow to automate processing on a test dataset (metagWGS ).\r\nOn the third day, learners will choose which analysis strategy to start with according to their experimental design and launch the first stage of metagWGS on their own data.\r\nBy the end of the course, trainees will be familiar with the scope, advantages and limitations of shotgun sequencing data analysis and will have started the analysis on their own data.\r\n\r\ncalendar\r\n \r\n\r\nThis training is focused on practice. It consists of several modules with a large variety of exercises:\r\n\r\nFirst Day\r\nStart at 09:00 am\r\nTour de table\r\nIntroduction to metagenomics, Illumina and Pacbio data, analysis stages, analysis limits, etc.\r\nPresentation of some key tools for each stage\r\nPractical work on the main stages launched independently\r\nEnd at 17:00 pm\r\nSecond Day\r\nStart at 09:00 am\r\nIntroduction to the advantages and disadvantages of workflows and containers\r\nLaunch of the data cleansing stage\r\nLaunch of the rest of the workflow and analysis of the multiQC report\r\nEnd at 17:00 pm\r\nThird Day – BYOD\r\nStart at 09:00 am\r\nDefine the analysis strategy and launch the start of the analysis of your own data.\r\nEnd at 17:00 pm maximum",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/analysis-of-shotgun-metagenomic-data/",
            "is_draft": false,
            "costs": [
                "Non-academic for non-academic: 1650€ + 20% taxes (TVA)",
                "Academic non-INRAE for academic but non-INRAE: 510 € + 20% taxes (TVA)",
                "INRAE for INRAE's staff: 450 € no VAT charged"
            ],
            "topics": [
                "http://edamontology.org/topic_3174"
            ],
            "keywords": [
                "NGS Data Analysis",
                "Metagenomics"
            ],
            "prerequisites": [
                "Linux/Unix",
                "Cluster"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 12,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api"
            ],
            "elixirPlatforms": [],
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            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 37,
                    "name": "MIAT 0875",
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            "city": "Jouy-en-Josas",
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            "registration_closing": "2025-04-21",
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            ],
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            "prerequisites": [
                "Linux and knowledge of NGS formats"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "Have an account on the Mesocentre UCA computing cluster (make a request if necessary on the site https://hub.mesocentre.uca.fr)\r\nAlternation of theoretical courses and practical work.\r\nCOME WITH A LAPTOP with an operational Eduroam connection.\r\nThe training is in French.",
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            "description": "L’objectif de cette formation est de se familiariser à l’utilisation de la ligne de commande pour un usage sur un cluster de\r\ncalcul afin d’acquérir les bases pour le traitement de données biologiques.\r\nPrésentation de l’infrastructure du cluster de calcul du Mésocentre Clermont Auvergne.\r\nIntroduction à l’environnement Linux.\r\nInitiation à un langage de scripting avec le shell Bash.\r\nManipulation en ligne de commande de fichiers de données d'origine biologique.\r\nComment se connecter au serveur de calcul.\r\nApprentissage du langage informatique Bash et comment naviguer dans un environnement Linux.\r\nExercices pratiques de saisie de commandes sur un terminal sans interface graphique.\r\nApprentissage de la gestion de fichiers, comment les créer, gérer les droits d’accès, les manipuler et les transférer sur le\r\ncluster de calcul ou les récupérer sur son poste de travail local.",
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            ],
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            "prerequisites": [
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            "openTo": "Everyone",
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            "end_date": "2025-04-09",
            "venue": "",
            "city": "Aubière",
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}