Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=160&ordering=contacts
{ "count": 628, "next": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=180&ordering=contacts", "previous": "https://catalogue.france-bioinformatique.fr/api/event/?format=api&limit=20&offset=140&ordering=contacts", "results": [ { "id": 612, "name": "RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - session 14 - 17 /05/2024", "shortName": "RNASeq bioinfo / biostat", "description": "The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3308", "http://edamontology.org/topic_0203" ], "keywords": [ "NGS Data Analysis", "Expression" ], "prerequisites": [ "Linux/Unix", "Cluster", "Langage R de base" ], "openTo": "Everyone", "accessConditions": "Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 33, "name": "Genotoul-biostat", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-biostat/?format=api" }, { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-03-26T14:25:27.655655Z", "type": "Training course", "start_date": "2024-05-14", "end_date": "2024-05-17", "venue": "", "city": "Castanet Tolosan", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [ { "id": 135, "name": "Training RNASeq - bioinfo part - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20bioinfo%20part%20-%20Genotoul-bioinfo/?format=api" }, { "id": 136, "name": "Training RNASeq - biostat part - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20biostat%20part%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-24", "registration_closing": null, "registration_status": "open", "courseMode": "Online" }, { "id": 199, "name": "Ecole single-cell 2019", "shortName": "SincellTE 2019", "description": "Transcriptomique et épigénomique en cellule unique: théorie et pratique", "homepage": "https://ressources.france-bioinformatique.fr/fr/evenements/sincellTE_2019", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2019-02-03", "end_date": "2019-02-08", "venue": "Station Biologique", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2018-11-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 422, "name": "Ecole thématique CNRS Single-Cell 2020 // Transcriptomique et épigénomique en cellule unique: théorie et pratique", "shortName": "SincellTE 2020", "description": "This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.", "homepage": "https://ressources.france-bioinformatique.fr/fr/evenements/ecole-single-cell-2020", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [ "Master", "Autre (Diplôme universitaire, école d'ingénieur ...)" ], "openTo": "Everyone", "accessConditions": "None", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2_0.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2020-09-27", "end_date": "2020-10-02", "venue": "Station Biologique", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2020-01-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 177, "name": "Ecole thématique CNRS Single-cell 2018", "shortName": "SincellTE 2018", "description": "Transcriptomique et épigénomique en cellule unique: théorie et pratique", "homepage": "https://ressources.france-bioinformatique.fr/fr/evenements/CNRS_2018", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-06-17", "end_date": "2018-06-22", "venue": "Station Biologique", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2018-02-28", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 405, "name": "4th Workshop Single-Cell / SincellTE 2022 / Single-Cell : Transcriptomics, Spatial and Multi-Omics", "shortName": "SincellTE 2022", "description": "This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.", "homepage": "https://www.france-bioinformatique.fr/formation/single-cell-2022/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [ "Master", "Autre (Diplôme universitaire, école d'ingénieur ...)" ], "openTo": "Everyone", "accessConditions": "None", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/644/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/sincellTE_logo_0_2.png", "updated_at": "2022-09-15T13:10:14.790898Z", "type": "Training course", "start_date": "2022-01-09", "end_date": "2022-01-14", "venue": "Roscoff Biological Station\r\nPlace Georges Teissier", "city": "Roscoff", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2021-09-15", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 598, "name": "Introduction à l'annotation de génomes bactériens avec Galaxy", "shortName": "", "description": "L’objectif est cette formation de se familiariser avec les étapes et les outils pour annoter des génomes bactériens. Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main de l’annotation de génomes bactériens en utilisant la plateforme de bio-analyse Galaxy. \r\n\r\nAprès une introduction à l’annotation de génomes bactériens, une session pratique sur la plateforme Galaxy couvrira comment :\r\n- faire tourner une série d’outils pour annoter un génome bactérien avec différents éléments génomiques,\r\n- évaluer l’annotation\r\n- visualiser un génome bactérien et ses annotations\r\n\r\nLes inscriptions se font via le formulaire suivant avant le 28 Février 2024 : https://framaforms.org/cycle-de-formations-mensuelles-a-lanalyse-de-donnees-sur-galaxy-1707229580\r\nNous sélectionnerons les participants sur la base du \"premier arrivé, premier servi\" et nous transmettrons la liste par session au service de formation continue de l'UCA qui vous enverra ensuite une convocation.", "homepage": "", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_0622", "http://edamontology.org/topic_3301", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_0097" ], "keywords": [ "Bacterial isolate", "Galaxy", "Structural and functional annotation of genomes" ], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Internal personnel", "accessConditions": "Formation ouverte au personnel de l’UCA & Associés\r\nAvoir un ordinateur portable et un accès wifi eduroam\r\nAvoir un compte sur la plateforme Galaxy (Faire une demande le cas échéant sur hub.mesocentre.uca.fr)\r\nÊtre familier avec Galaxy", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" }, { "id": 16, "name": "Université Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Universit%C3%A9%20Clermont%20Auvergne/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 96, "name": "Mésocentre Clermont-Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=api" } ], "organisedByTeams": [ { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175", "updated_at": "2024-02-15T13:46:59.624049Z", "type": "Training course", "start_date": "2024-05-15", "end_date": "2024-05-15", "venue": "Bâtiment Turing, Salle A009", "city": "Clermont-Ferrand", "country": "France", "geographical_range": "Local", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "trainingMaterials": [ { "id": 129, "name": "Bacterial Genome Annotation", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Bacterial%20Genome%20Annotation/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-02-08", "registration_closing": "2024-02-28", "registration_status": "closed", "courseMode": "Online" }, { "id": 595, "name": "Introduction à l'analyse de données de métabarcoding 16S avec Galaxy", "shortName": "", "description": "L’objectif de cette formation est de se familiariser avec les étapes et les outils pour analyses de données de métabarcoding 16S. Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main de ces étapes d’analyses en utilisant la plateforme de bio-analyse Galaxy. \r\n\r\nAprès une introduction au métabarcoding 16S, une session pratique sur la plateforme Galaxy couvrira comment :\r\n- évaluer la qualité de données de métabarcoding ,\r\n- analyser et visualiser une communauté microbienne à partir de données de métabarcoding 16S\r\n\r\nLes inscriptions se font via le formulaire suivant avant le 28 Février 2024 : https://framaforms.org/cycle-de-formations-mensuelles-a-lanalyse-de-donnees-sur-galaxy-1707229580\r\nNous sélectionnerons les participants sur la base du \"premier arrivé, premier servi\" et nous transmettrons la liste par session au service de formation continue de l'UCA qui vous enverra ensuite une convocation.", "homepage": "", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_3697", "http://edamontology.org/topic_0637" ], "keywords": [ "Galaxy", "Metabarcoding" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Formation ouverte au personnel de l’UCA & Associés\r\nAvoir un ordinateur portable et un accès wifi eduroam\r\nAvoir un compte sur la plateforme Galaxy (Faire une demande le cas échéant sur hub.mesocentre.uca.fr)\r\nÊtre familier avec Galaxy", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" }, { "id": 16, "name": "Université Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Universit%C3%A9%20Clermont%20Auvergne/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 96, "name": "Mésocentre Clermont-Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=api" } ], "organisedByTeams": [ { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175", "updated_at": "2024-02-15T13:47:06.720309Z", "type": "Training course", "start_date": "2024-06-19", "end_date": "2024-06-19", "venue": "Bâtiment Turing, Salle A009", "city": "Clermont-Ferrand", "country": "France", "geographical_range": "Local", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "trainingMaterials": [ { "id": 131, "name": "16S Microbial Analysis with mothur", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/16S%20Microbial%20Analysis%20with%20mothur/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-02-08", "registration_closing": "2024-02-28", "registration_status": "closed", "courseMode": "Online" }, { "id": 593, "name": "Introduction à l'analyse de données de séquençage avec contrôle qualité et alignement sur un génome de référence avec Galaxy", "shortName": "", "description": "L’objectif de cette formation est de se familiariser avec les premières étapes communes à toutes les analyses de données de séquençage : le contrôle qualité des données et l’alignement sur un génome de référence. Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main des ces étapes d’analyses en utilisant la plateforme de bio-analyse Galaxy. \r\n\r\nAprès une introduction aux données de séquençage, une session pratique sur la plateforme Galaxy couvrira comment :\r\n- évaluer la qualité de données de séquençage,\r\n- améliorer la qualité de données de séquençage\r\n- aligner des données sur un génome de référence\r\n\r\nLes inscriptions se font via le formulaire suivant avant le 28 Février 2024 : https://framaforms.org/cycle-de-formations-mensuelles-a-lanalyse-de-donnees-sur-galaxy-1707229580\r\nDans ce formulaire, vous pouvez sélectionner les sessions qui vous intéressent. Nous sélectionnerons les participants sur la base du \"premier arrivé, premier servi\" et nous transmettrons la liste par session au service de formation continue de l'UCA qui vous enverra ensuite une convocation.", "homepage": "", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_0091", "http://edamontology.org/topic_0102" ], "keywords": [ "Quality Control", "Galaxy", "Mapping" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Formation ouverte au personnel de l’UCA & Associés\r\nAvoir un ordinateur portable et un accès wifi eduroam\r\nAvoir un compte sur la plateforme Galaxy (Faire une demande le cas échéant sur hub.mesocentre.uca.fr)\r\nÊtre familier avec Galaxy", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" }, { "id": 16, "name": "Université Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Universit%C3%A9%20Clermont%20Auvergne/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 96, "name": "Mésocentre Clermont-Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=api" } ], "organisedByTeams": [ { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175", "updated_at": "2024-02-15T13:46:52.060588Z", "type": "Training course", "start_date": "2024-04-10", "end_date": "2024-04-10", "venue": "Bâtiment Turing, Salle A009", "city": "Clermont-Ferrand", "country": "France", "geographical_range": "Local", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "trainingMaterials": [ { "id": 128, "name": "Mapping with Galaxy", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Mapping%20with%20Galaxy/?format=api" }, { "id": 127, "name": "Quality Control with Galaxy", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Quality%20Control%20with%20Galaxy/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-02-08", "registration_closing": "2024-02-28", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 592, "name": "Initiation à l’utilisation de la plateforme de bio-analyse Galaxy", "shortName": "", "description": "L’objectif de cette formation est de se familiariser avec l’interface utilisateur de Galaxy. Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main de l’interface Galaxy. Vous découvrirez comment importer des données, faire une analyse simple, gérer un historique et construire un workflow.\r\n\r\nCette formation se base sur le contenu du Galaxy Training Network (GTN). Plus de 300 tutoriels sont mis à disposition sur le web (https://training.galaxyproject.org/) organisés autour de différentes thématiques biologiques. Nous aborderons ici les bases du fonctionnement de la plateforme Galaxy.\r\n\r\n\r\nLes inscriptions se font via le formulaire suivant avant le 28 Février 2024 : https://framaforms.org/cycle-de-formations-mensuelles-a-lanalyse-de-donnees-sur-galaxy-1707229580\r\nDans ce formulaire, vous pouvez sélectionner les sessions qui vous intéressent. Nous sélectionnerons les participants sur la base du \"premier arrivé, premier servi\" et nous transmettrons la liste par session au service de formation continue de l'UCA qui vous enverra ensuite une convocation.", "homepage": "", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_0091" ], "keywords": [ "Galaxy" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Formation ouverte au personnel de l’UCA & Associés\r\nAvoir un ordinateur portable et un accès wifi eduroam\r\nAvoir un compte sur la plateforme Galaxy (Faire une demande le cas échéant sur hub.mesocentre.uca.fr)", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 16, "name": "Université Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Universit%C3%A9%20Clermont%20Auvergne/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 96, "name": "Mésocentre Clermont-Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=api" } ], "organisedByTeams": [ { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175", "updated_at": "2024-02-08T10:45:39.749607Z", "type": "Training course", "start_date": "2024-03-13", "end_date": "2024-03-13", "venue": "Bâtiment Turing, Salle A009", "city": "Clermont-Ferrand", "country": "France", "geographical_range": "Local", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "trainingMaterials": [ { "id": 126, "name": "Galaxy 101 for everyone", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Galaxy%20101%20for%20everyone/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-02-08", "registration_closing": "2024-02-28", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 642, "name": "A Hackathon for microbial data analysis workflow FAIRification", "shortName": "", "description": "The primary goal of this hackathon is to prepare, integrate, and FAIRify microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), ensuring they adhere to best practices for accessibility, interoperability, and reusability across the bioinformatics community. IWC acts as a central hub for Galaxy workflows, automatically listing them in major registries like Dockstore and WorkflowHub, while ensuring workflows are rigorously reviewed, tested, and updated with every new Galaxy release. Versioning, tool updates, and essential metadata enhance the findability and usability of each workflow.\r\n\r\nIn short, the objectives of this hackathon are to:\r\n- Annotate and apply best practices to microbial data analysis Galaxy workflows for consistency and reusability\r\n- Implement robust tests to ensure workflow reliability and accuracy\r\n- Successfully integrate key microbial data analysis Galaxy workflows into IWC, improving accessibility and usability\r\n- Collaborate as a community to refine and improve workflows, ensuring they are peer-reviewed and meet high standards\r\n- Make these peer-reviewed workflows accessible to the broader community through the future microGalaxy Lab\r\n\r\nThis hackathon is open to participants from all communities, so join us to help shape the future of bioinformatics workflows! Experts and IWC experienced users will be participating in the hackathon to support and explain the requirements during the event.", "homepage": "https://galaxyproject.org/events/2024-11-21-hackathon-microgalaxy-iwc/", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0769", "http://edamontology.org/topic_3697", "http://edamontology.org/topic_3941", "http://edamontology.org/topic_0121", "http://edamontology.org/topic_3174" ], "keywords": [ "Galaxy", "Workflow development" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" }, { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": null, "updated_at": "2024-11-22T09:55:01.514886Z", "type": "Workshop", "start_date": "2024-11-21", "end_date": "2024-11-21", "venue": "Online with a\r\n • a Zoom room, open the whole week\r\n • 2 stand-ups to accommodate different time zones\r\n • Several brainstorming meetings\r\n • microGalaxy Matrix chat for communication", "city": "", "country": "", "geographical_range": "International", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-10-10", "registration_closing": null, "registration_status": "open", "courseMode": "Online" }, { "id": 637, "name": "Introduction à l'analyse de données transcriptomiques avec Galaxy", "shortName": "", "description": "L’objectif est de se familiariser avec les étapes d’analyses des données transcriptomiques ou RNA-seq avec référence pour extraire les gènes et fonctions différentiellement exprimés. Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main de ces étapes d’analyses en utilisant la plateforme de bio-analyse Galaxy. \r\n\r\n\r\nAprès une introduction à la transcriptomique, une session pratique sur la plateforme Galaxy couvrira comment :\r\n- évaluer la qualité des données transcriptomiques,\r\n- aligner des données transcriptomiques sur un génome de référence,\r\n- estimer le nombre de séquences par gènes,\r\n- construire et faire une analyse d’expression différentielle des gènes\r\n- faire une analyse de l’enrichissement fonctionnel des gènes différentiellement exprimés", "homepage": "", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_3308", "http://edamontology.org/topic_1775", "http://edamontology.org/topic_0203", "http://edamontology.org/topic_3170" ], "keywords": [ "Galaxy", "RNA-seq", "Transcriptomics (RNA-seq)" ], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Internal personnel", "accessConditions": "Formation ouverte au personnel de l’UCA & Associés\r\nAvoir un ordinateur portable et un accès wifi eduroam\r\nAvoir un compte sur la plateforme Galaxy (Faire une demande le cas échéant sur hub.mesocentre.uca.fr)\r\nÊtre familier avec Galaxy", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/807/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" }, { "id": 16, "name": "Université Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Universit%C3%A9%20Clermont%20Auvergne/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 96, "name": "Mésocentre Clermont-Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=api" } ], "organisedByTeams": [ { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175", "updated_at": "2024-06-06T08:09:16.432369Z", "type": "Training course", "start_date": "2024-07-18", "end_date": "2024-07-18", "venue": "Bâtiment Turing, Salle A009", "city": "Clermont-Ferrand", "country": "France", "geographical_range": "Local", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/522/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/807/?format=api" ], "trainingMaterials": [ { "id": 144, "name": "Reference-based RNA-Seq data analysis with Galaxy", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Reference-based%20RNA-Seq%20data%20analysis%20with%20Galaxy/?format=api" }, { "id": 145, "name": "Introduction to Transcriptomics", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Introduction%20to%20Transcriptomics/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-06-06", "registration_closing": "2024-06-20", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 604, "name": "Hackathon - Improving the annotation of Galaxy resources for microbial data analysis and beyond", "shortName": "", "description": "This hackathon aims to improve the annotation of Galaxy resources for microbial data analysis and beyond\r\n\r\nThe objective of this hackathon is to improve the annotation of the Galaxy resources (tools, training, workflows) for microbial data analysis by:\r\n\r\n - Linking microbial Galaxy tools to bio.tools to obtain EDAM ontology annotation\r\n - Improving bio.tools annotations\r\n - Annotating existing microbial-related tutorials with EDAM terms\r\n - Reflecting on the addition of EDAM terms to workflows\r\n - Reflecting on missing terms in the EDAM ontology for microbial data analyses\r\n - Brainstorming about a way to connect tool annotations to improve training and workflow annotations", "homepage": "https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annotation/#preliminary-schedule", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0769", "http://edamontology.org/topic_3941", "http://edamontology.org/topic_3174", "http://edamontology.org/topic_3697" ], "keywords": [ "EDAM", "Annotation", "Galaxy" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" }, { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": null, "updated_at": "2024-02-19T10:09:50.076964Z", "type": "Workshop", "start_date": "2024-03-11", "end_date": "2024-03-15", "venue": "Online with a\r\n • a Zoom room, open the whole week\r\n • 2 daily stand-ups to accommodate different time zones\r\n • Several brainstorming meetings\r\n • microGalaxy Matrix chat for communication", "city": "", "country": "", "geographical_range": "International", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-02-19", "registration_closing": null, "registration_status": "open", "courseMode": "Online" }, { "id": 599, "name": "Introduction au profilage taxonomique et visualisation de communautés microbiennes à partir de données métagénomiques avec Galaxy", "shortName": "", "description": "L’objectif de cette formation est de se familiariser avec les étapes et les outils d’analyse de données de métagénomiques pour caractériser et visualiser des communautés microbiennes. Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main de ces étapes en utilisant la plateforme de bio-analyse Galaxy. \r\n\r\nAprès une introduction à la métagénomique, une session pratique sur la plateforme Galaxy couvrira comment :\r\n- assigner des taxons à des données de métagénomiques,\r\n- visualiser une communauté microbienne à partir d’assignations taxonomiques\r\n\r\nLes inscriptions se font via le formulaire suivant avant le 28 Février 2024 : https://framaforms.org/cycle-de-formations-mensuelles-a-lanalyse-de-donnees-sur-galaxy-1707229580\r\nNous sélectionnerons les participants sur la base du \"premier arrivé, premier servi\" et nous transmettrons la liste par session au service de formation continue de l'UCA qui vous enverra ensuite une convocation.", "homepage": "", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_3697", "http://edamontology.org/topic_3174", "http://edamontology.org/topic_0637" ], "keywords": [ "Galaxy" ], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Internal personnel", "accessConditions": "Formation ouverte au personnel de l’UCA & Associés\r\nAvoir un ordinateur portable et un accès wifi eduroam\r\nAvoir un compte sur la plateforme Galaxy (Faire une demande le cas échéant sur hub.mesocentre.uca.fr)\r\nÊtre familier avec Galaxy", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" }, { "id": 16, "name": "Université Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Universit%C3%A9%20Clermont%20Auvergne/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 96, "name": "Mésocentre Clermont-Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=api" } ], "organisedByTeams": [ { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175", "updated_at": "2024-02-15T13:47:14.064675Z", "type": "Training course", "start_date": "2024-09-11", "end_date": "2024-09-11", "venue": "Bâtiment Turing, Salle A009", "city": "Clermont-Ferrand", "country": "France", "geographical_range": "Local", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "trainingMaterials": [ { "id": 130, "name": "Taxonomic Profiling and Visualization of Metagenomic Data", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Taxonomic%20Profiling%20and%20Visualization%20of%20Metagenomic%20Data/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-02-08", "registration_closing": "2024-02-28", "registration_status": "closed", "courseMode": "Online" }, { "id": 508, "name": "Principes FAIR dans un projet de bioinformatique - Session 2023", "shortName": "FAIR_bioinfo_2023", "description": "L’Institut Français de Bioinformatique (IFB) organise en partenariat avec l’Institut de Biologie Intégrative de la Cellule (I2BC) une formation à destination des bioinformaticiens et biostatisticiens souhaitant mettre en oeuvre les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) dans leurs projets d’analyse et de développement. Les concepts FAIR, initialement définis dans le contexte d’ouverture des données de la recherche, seront ici adaptés pour cadrer avec un projet type de développement et/ou analyse bioinformatique/biostatistique. Ainsi, la formation n’abordera pas les aspects “FAIR” spécifiques aux données mais introduira plusieurs outils permettant d’améliorer la reproductibilité des analyses.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=19", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0769" ], "keywords": [ "FAIR", "Computing Environments", "NGS Sequencing Data Analysis", "Workflow development" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 15, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [ { "id": 1, "name": "Training", "url": "https://catalogue.france-bioinformatique.fr/api/elixirplatform/Training/?format=api" } ], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://www.france-bioinformatique.fr/wp-content/uploads/logo-ifb-couleur.svg", "updated_at": "2023-10-16T08:28:12.972795Z", "type": "Training course", "start_date": "2023-10-09", "end_date": "2023-10-11", "venue": "Institut des Systèmes Complexes", "city": "Paris", "country": "France", "geographical_range": "National", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/697/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/362/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/563/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/605/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2023-04-03", "registration_closing": "2023-05-30", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 721, "name": "RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - 24-27 November 2025", "shortName": "RNASeq bioinfo / biostat", "description": "The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3308", "http://edamontology.org/topic_0203" ], "keywords": [ "NGS Data Analysis", "Expression" ], "prerequisites": [ "Langage R de base", "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/\r\nNon-academic\r\nfor non-academic: 550€ + 20% taxes (TVA) per day\t€2 200,00\t\r\n\r\nAcademic non-INRAE\r\nfor academic but non-INRAE: 170 € + 20% taxes (TVA) per day\t€680,00\t\r\n\r\nINRAE\r\nfor INRAE's staff: 150 € no VAT charged per day;\t€600,00", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 33, "name": "Genotoul-biostat", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-biostat/?format=api" }, { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2025-05-09T13:21:03.858451Z", "type": "Training course", "start_date": "2025-11-24", "end_date": "2025-11-27", "venue": "", "city": "castanet-tolosan", "country": "France", "geographical_range": "National", "trainers": [], "trainingMaterials": [ { "id": 135, "name": "Training RNASeq - bioinfo part - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20bioinfo%20part%20-%20Genotoul-bioinfo/?format=api" }, { "id": 136, "name": "Training RNASeq - biostat part - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20biostat%20part%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2025-05-09", "registration_closing": "2025-11-17", "registration_status": "closed", "courseMode": "Online" }, { "id": 612, "name": "RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS - session 14 - 17 /05/2024", "shortName": "RNASeq bioinfo / biostat", "description": "The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3308", "http://edamontology.org/topic_0203" ], "keywords": [ "NGS Data Analysis", "Expression" ], "prerequisites": [ "Linux/Unix", "Cluster", "Langage R de base" ], "openTo": "Everyone", "accessConditions": "Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 33, "name": "Genotoul-biostat", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-biostat/?format=api" }, { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2024-03-26T14:25:27.655655Z", "type": "Training course", "start_date": "2024-05-14", "end_date": "2024-05-17", "venue": "", "city": "Castanet Tolosan", "country": "France", "geographical_range": "", "trainers": [], "trainingMaterials": [ { "id": 135, "name": "Training RNASeq - bioinfo part - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20bioinfo%20part%20-%20Genotoul-bioinfo/?format=api" }, { "id": 136, "name": "Training RNASeq - biostat part - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20biostat%20part%20-%20Genotoul-bioinfo/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-03-24", "registration_closing": null, "registration_status": "open", "courseMode": "Online" }, { "id": 736, "name": "Training Plant Data Management - 2021", "shortName": "MIAPPE 2021", "description": "The Minimal Information About Plant Phenotyping Experiments (MIAPPE, www.miappe.org) standard has been designed by ELIXIR, EMPHASIS and Bioversity international to guide plant scientist in the management of experimental data. Furthermore, since genetic studies relies on the integration and the linking between phenotype and genotype datasets, relevant section of MIAPPE are beginning to be used for genotyping standards.\r\nThis formation will cover a general introduction of the MIAPPE principles and some examples to illustrate different use cases on the usage of MIAPPE for plant phenotyping data standardization.", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3572", "http://edamontology.org/topic_3298", "http://edamontology.org/topic_0625", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_0780" ], "keywords": [ "Données" ], "prerequisites": [ "none" ], "openTo": "Internal personnel", "accessConditions": "Pour l'IPS2", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/755/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/815/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 39, "name": "URGI - US1164", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/URGI%20-%20US1164/?format=api" } ], "organisedByTeams": [ { "id": 26, "name": "URGI", "url": "https://catalogue.france-bioinformatique.fr/api/team/URGI/?format=api" } ], "logo_url": "https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png", "updated_at": "2025-11-28T13:21:33.032401Z", "type": "Training course", "start_date": "2021-09-23", "end_date": "2021-09-23", "venue": "", "city": "", "country": "", "geographical_range": "Local", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/755/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/815/?format=api" ], "trainingMaterials": [ { "id": 150, "name": "Plant Data Managment for Phenotyping Experiments - MIAPPE", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Plant%20Data%20Managment%20for%20Phenotyping%20Experiments%20-%20MIAPPE/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Online" }, { "id": 737, "name": "H2020-AGENT Datathon on experimental phenotypic data management using the FAIRDOM platform - 2022", "shortName": "FAIRDOM 2022", "description": "Datathon on experimental phenotypic data management using the FAIRDOM platform, and submission workflow using curation & validation tools.", "homepage": "https://urgi.versailles.inrae.fr/fairdom/events/1", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3572", "http://edamontology.org/topic_3365", "http://edamontology.org/topic_3366", "http://edamontology.org/topic_0625", "http://edamontology.org/topic_0780", "http://edamontology.org/topic_0091", "http://edamontology.org/topic_3571" ], "keywords": [ "Données" ], "prerequisites": [ "Attendees will bring their own data" ], "openTo": "Internal personnel", "accessConditions": "For H2020-AGENT project members only", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/755/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 21, "name": "H2020-AGENT", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/H2020-AGENT/?format=api" } ], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 39, "name": "URGI - US1164", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/URGI%20-%20US1164/?format=api" } ], "organisedByTeams": [ { "id": 26, "name": "URGI", "url": "https://catalogue.france-bioinformatique.fr/api/team/URGI/?format=api" } ], "logo_url": "https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png", "updated_at": "2025-09-13T13:27:15.246574Z", "type": "Training course", "start_date": "2022-04-11", "end_date": "2022-04-13", "venue": "", "city": "Versailles", "country": "France", "geographical_range": "International", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/755/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": "Blended" }, { "id": 538, "name": "Workshop nf-core et sarek - 8 et 9 Décembre 2022", "shortName": "", "description": "Dans le cadre du réseau métier ingénieur.e.s lillois, bilille organise un workshop de 2 jours autour de la communauté internationale et des pipelines de bioinformatique nf-core, les 8 et 9 Décembre sur le campus Cité Scientifique de l’Université de Lille, à Villeneuve d’Ascq.\r\n\r\nLe projet nf-core a été créé en 2018 afin de proposer et maintenir de manière collaborative des pipelines d’analyse de bioinformatique en Nextflow selon des standards stricts de qualité et de reproductibilité, tout en facilitant leur mise en œuvre sur la majorité des infrastructures de calcul. La communauté, très active, qui s’organise autour de cette collection de pipelines rassemble des scientifiques du monde entier, issus de parcours très divers.\r\n\r\nÀ l’occasion de cet atelier, nous accueillerons Maxime Garcia (Seqera labs, Stockholm), membre de l’équipe d’administration nf-core et développeur principal du pipeline d’analyse de variants génomique Sarek. Il présentera la communauté aux participant.e.s et les formera à l’utilisation de ces pipelines d’analyse, en alternant les présentations avec des mises en pratique. Il présentera également les outils de développement mis en place par nf-core pour permettre aux participant.e.s de contribuer aux outils existants et de proposer, si elles et ils le souhaitent, leurs propres pipelines selon les standards de la communauté.", "homepage": "https://ums-plbs.univ-lille.fr/workshop-nf-core-et-sarek-avec-maxime-garcia", "is_draft": false, "costs": [ "Free to academics" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Cet atelier s’adressant à un public averti en bioinformatique et/ou en biostatistiques, nous attendons des participant.e.s ayant déjà acquis une certaine familiarité avec les compétences suivantes :\r\n- Utilisation courante de la ligne de commande sous Unix\r\n- Utilisation des logiciels d’analyse de données de séquençage à haut débit\r\n- Utilisation de ressources de calcul intensif (cloud, cluster, …)\r\n- Connaissances de base sur les gestionnaires de workflow (Nextflow, SnakeMake, CWL, Galaxy,…)\r\n\r\nUne familiarité avec Nextflow, Conda et des gestionnaires de containers (Docker/Singularity) sera également utile, sans être toutefois obligatoire.", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/757/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 3, "name": "Bilille", "url": "https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=api" } ], "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png", "updated_at": "2024-12-09T17:37:41.821856Z", "type": "Training course", "start_date": "2022-12-08", "end_date": "2022-12-09", "venue": "", "city": "Villeneuve d'Ascq", "country": "FRANCE", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2022-10-26", "registration_closing": "2022-11-14", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 505, "name": "2e Ecole Thématique de Bioinformatique Intégrative / Integrative Bioinformatics Training School", "shortName": "Second session of ETBII", "description": "La bioinformatique intégrative est une thématique scientifique pluridisciplinaire récente qui combine et analyse des données biologiques provenant de différentes sources dans le but d’obtenir une compréhension holistique des systèmes biologiques. \r\nL’Institut Français de Bioinformatique (IFB) organise une école thématique à destination des bioinformaticiens/biostatisticiens/bioanalystes souhaitant acquérir des compétences théoriques et pratiques en bioinformatique intégrative.\r\nCette école rassemble une équipe pédagogique de 10 personnes et pourra accueillir 30 participants maximum pour sa deuxième édition.\r\nL’ensemble de la formation reposera sur l’utilisation des ressources de calcul et environnements de travail de l’Institut Français de Bioinformatique (https://www.france-bioinformatique.fr/calcul-et-stockage/).\r\n\r\nPublic visé\r\nCette formation est ouverte à tous les scientifiques (ingénieurs, chercheurs dans des plateformes ou équipes de recherche) impliqués dans un ou plusieurs projets de bioinformatique intégrative mobilisant des jeux de données omiques de natures différentes.\r\n\r\nPré-requis\r\nConnaissances de base en Unix/shell, R, Python\r\nAutonomie dans la gestion de son poste de travail (installation de librairies et utilisation des environnements de packaging type conda)", "homepage": "https://www.france-bioinformatique.fr/formation/etbii/", "is_draft": false, "costs": [ "770 TTC pour les académiques et 1540 TTC pour les privés" ], "topics": [ "http://edamontology.org/topic_0091", "http://edamontology.org/topic_3391", "http://edamontology.org/topic_3366" ], "keywords": [ "Methodology", "Biostatistics", "Biological network inference and analysis", "Dimension reduction", "Semantic web", "Integration of heterogeneous data", "Data Integration", "Tool integration" ], "prerequisites": [ "Linux and knowledge of NGS formats", "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "Cette formation est ouverte à toute la communauté, en priorité aux bioinformaticien·ne·s des plateformes membres et équipes associées IFB souhaitant contribuer à la constitution de matériel pédagogique pour se préparer au montage de futures formations sur ce thème.", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://www.france-bioinformatique.fr/wp-content/uploads/Logo_ETBII_Couleurs.png", "updated_at": "2023-10-25T13:31:05.639302Z", "type": "Training course", "start_date": "2024-03-24", "end_date": "2024-03-29", "venue": "", "city": "Fréjus", "country": "France", "geographical_range": "", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/756/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/770/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/750/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/237/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/657/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/722/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/146/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/556/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/721/?format=api" ], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": "2023-12-01", "registration_status": "closed", "courseMode": "Onsite" } ] }
