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            "name": "Reproducible Research 2023",
            "shortName": "",
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            "homepage": "https://southgreenplatform.github.io/training_reproducible_research/",
            "is_draft": false,
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            "openTo": "Internal personnel",
            "accessConditions": "Open to South Green close collaborators",
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            "start_date": "2023-06-14",
            "end_date": "2023-06-16",
            "venue": "",
            "city": "Montpellier",
            "country": "",
            "geographical_range": "",
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            "homepage": "https://southgreenplatform.github.io/trainings//metabarcoding/",
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            "costs": [
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            "openTo": "Internal personnel",
            "accessConditions": "Open to South Green close collaborators",
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            "start_date": "2022-06-27",
            "end_date": "2022-06-28",
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            "keywords": [
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                "SLURM"
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            "prerequisites": [
                "Linux - Basic Knowledge",
                "Cluster"
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            "openTo": "Internal personnel",
            "accessConditions": "Oprn to South Green close collaborators",
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            "type": "Training course",
            "start_date": "2023-05-18",
            "end_date": "2023-05-19",
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            "id": 564,
            "name": "Introduction to Structural variant detection analyses 2022",
            "shortName": "",
            "description": "Program\r\n\r\n*  Handling mapping tools suitable for ILLUMINA and ONT data (bwa, minimap2)\r\n*  SNP detection from mapping of short reads against a reference genome: SNP calling, filters and SNP annotation. Examples of possible studies based on SNP arrays\r\n* Detecting Structural Variations (SV) in short and long reads (breakdancer, sniffle)\r\n* SV detection from genome assembly and comparison (minimap2, nucmer, assemblytics, siry)",
            "homepage": "https://southgreenplatform.github.io/trainings//sv/",
            "is_draft": false,
            "costs": [
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            "topics": [],
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                "Linux and knowledge of NGS formats"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "Open to South Green close collaborators",
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            "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png",
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            "end_date": "2022-06-24",
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            "country": "france",
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            "name": "RNA-Seq analysis 2023",
            "shortName": "",
            "description": "Introduction to RNA-Seq analysis",
            "homepage": "https://southgreenplatform.github.io/trainings//rnaseq/",
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            "end_date": "2023-06-01",
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            "name": "Introduction to Oxford Nanopore Technology data analyses 2023",
            "shortName": "Introduction to ONT data analyses 2023",
            "description": "This course offers an introduction to ONT data analysis. It includes 5 issues: basecalling, reads quality control, assemblies and polishing/correction, contig quality and structural variants detection.",
            "homepage": "https://southgreenplatform.github.io/trainings//ont/",
            "is_draft": false,
            "costs": [
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            "topics": [
                "http://edamontology.org/topic_0196",
                "http://edamontology.org/topic_3168",
                "http://edamontology.org/topic_3673"
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            "updated_at": "2023-12-04T15:32:22.626277Z",
            "type": "Training course",
            "start_date": "2023-05-25",
            "end_date": "2023-05-26",
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            "city": "Montpellier",
            "country": "France",
            "geographical_range": "",
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                "https://catalogue.france-bioinformatique.fr/api/userprofile/558/?format=api",
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            "name": "Introduction to Microbial Comparative Genomics 2022",
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            "topics": [],
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                "Structural genomics",
                "Genome analysis"
            ],
            "prerequisites": [
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            "name": "Linux For Jedi 2023",
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            "description": "This course offers to develop and enhance advanced Linux shell command line and scripting skills for the processing and analysis of NGS data. We will work on a HPC server and use linux powerful commands to allow to analyze big amount of biological data.",
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            "is_draft": false,
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                "Linux - Basic Knowledge"
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