{"id":746,"name":"RNASeq Analysis","shortName":"RNASeq Analysis","description":"Objectives\r\n- Understand the key steps in RNASeq data analysis for a differential expression study\r\n- Know how to perform command-line analysis using Snakemake.\r\n\r\nPedagogical Content\r\nDay 1\r\n- Principle of RNASeq technology: objectives and experimental design.\r\n- Data quality assessment (FastQC, MultiQC).\r\n- Sequence alignment to a reference genome (STAR).\r\n\r\nDay 2\r\n- Differential gene expression analysis (HTSeqCount, DESeq2).\r\n- Functional annotation (GO, Kegg).\r\n- Using the Snakemake workflow system.\r\n- Comparison between RNASeq and 3’SRP methods.\r\n\r\nThe theoretical part is followed by a pipeline run step-by-step on a test dataset. \r\nIt will be possible to start an analysis on your own data.","homepage":"https://pf-bird.univ-nantes.fr/training/rnaseq/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"Familiarity with basic Linux commands.","maxParticipants":12,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://bird.univ-nantes.io/website/images/logo/logo.svg","updated_at":"2026-01-27T10:34:29.823975Z","type":"Training course","start_date":"2025-11-03","end_date":"2025-11-04","venue":"","city":"Nantes","country":"","geographical_range":"National","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":"2025-10-29","registration_status":"closed","courseMode":"Onsite"}