{"id":566,"name":"Metabarcoding analyses 2022","shortName":"","description":"This course offers an introduction to metabarcoding analyses at two different levels/steps: bioinformatics with FROGS pipeline in the Galaxy environment, biostatistics with PhyloSeq R package. This includes preprocessing, clustering and OTU picking, taxonomic assignation, estimation of diversity, visualization of statistics results.\r\nPrerequisites\r\nGalaxy, R knowledge\r\n\r\nProgram\r\nIntroduction to metagenomics and metabarcoding\r\nPre-processing, Clustering, taxonomic affiliation (FROGS)\r\nHandling and visualizing OTU table using PhyloSeq R package (PhyloSeq)\r\n\r\n\r\nLearning objectives\r\nManipulate tools available for metabarcoding analysis\r\nStudy sample diversity by using NGS and post-NGS analysis tools\r\nVisualize diversity metrics in metabarcoding approach​\r\n\r\n\r\nInstructors\r\nJulie Orjuela - julie.orjuela@ird.fr\r\nFlorentin Constancias - florentin.constancias@cirad.fr\r\nAlexis Dereeper - alexis.dereeper@ird.fr","homepage":"https://southgreenplatform.github.io/trainings//metabarcoding/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Open to South Green close collaborators","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"https://southgreenplatform.github.io/trainings//images/southgreenlong.png","updated_at":"2023-12-04T15:31:47.907535Z","type":"Training course","start_date":"2022-06-27","end_date":"2022-06-28","venue":"","city":"montpellier","country":"france","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"}