{"id":564,"name":"Introduction to Structural variant detection analyses 2022","shortName":"","description":"Program\r\n\r\n*  Handling mapping tools suitable for ILLUMINA and ONT data (bwa, minimap2)\r\n*  SNP detection from mapping of short reads against a reference genome: SNP calling, filters and SNP annotation. Examples of possible studies based on SNP arrays\r\n* Detecting Structural Variations (SV) in short and long reads (breakdancer, sniffle)\r\n* SV detection from genome assembly and comparison (minimap2, nucmer, assemblytics, siry)","homepage":"https://southgreenplatform.github.io/trainings//sv/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":["Linux and knowledge of NGS formats"],"openTo":"Internal personnel","accessConditions":"Open to South Green close collaborators","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"https://southgreenplatform.github.io/trainings//images/southgreenlong.png","updated_at":"2023-12-04T15:32:04.974511Z","type":"Training course","start_date":"2022-06-21","end_date":"2022-06-24","venue":"","city":"montpellier","country":"france","geographical_range":"","trainers":[],"trainingMaterials":[],"computingFacilities":[],"realisation_status":"past","registration_opening":null,"registration_closing":null,"registration_status":"unknown","courseMode":"Onsite"}